HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:11.2 nTPM
HPA Brain:22.9 nTPM
GTEx:11.2 nTPM
FANTOM5:44.6 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:23.0 nTPM
Allen mouse:12.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029247Antibody HPA029248
Glial cells MediumLow
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 22.9
Sample id Sample description nTPM
Hippocampus
nTPM: 19.5
2148 Female, age 91, left hemisphere 20.6
2529 Female, age 94, left hemisphere 20.1
1898 Male, age 80, left hemisphere 19.9
1911 Female, age 85, right hemisphere 19.6
1855 Male, age 76, left hemisphere 18.8
2621 Female, age 67, right hemisphere 17.9
Dentate gyrus
nTPM: 20.4
1927 Female, age 91, both hemispheres 23.0
2530 Female, age 94, left hemisphere 21.5
2531 Female, age 67, both hemispheres 20.8
2528 Male, age 74, both hemispheres 19.1
2010 Male, age 76, both hemispheres 19.0
2246 Female, age 85, both hemispheres 18.9
Entorhinal gyrus
nTPM: 22.0
2613 Female, age 94, left hemisphere 23.5
1938 Female, age 85, left hemisphere 22.5
2764 Male, age 80, right hemisphere 22.0
1787 Male, age 76, left hemisphere 21.8
2686 Male, age 75, right hemisphere 21.5
2117 Female, age 91, right hemisphere 20.8
Hippocampus, CA1
nTPM: 20.3
2749 Male, age 80, left hemisphere 25.6
2527 Male, age 74, both hemispheres 20.3
1873 Female, age 85, both hemispheres 19.1
2082 Female, age 91, right hemisphere 18.7
2045 Male, age 76, both hemispheres 17.9
Hippocampus, CA2
nTPM: 20.1
2437 Female, age 94, left hemisphere 21.9
2113 Female, age 91, right hemisphere 20.7
1940 Female, age 85, left hemisphere 20.2
1963 Male, age 80, left hemisphere 19.8
1892 Male, age 76, both hemispheres 19.5
2249 Male, age 74, both hemispheres 18.6
Hippocampus, CA3
nTPM: 20.5
2137 Male, age 80, left hemisphere 25.6
1891 Female, age 85, both hemispheres 21.5
2620 Female, age 94, left hemisphere 20.8
2436 Male, age 74, both hemispheres 18.7
1867 Male, age 76, both hemispheres 18.1
2861 Female, age 67, both hemispheres 18.1
Parahippocampal cortex
nTPM: 21.4
1850 Male, age 80, both hemispheres 24.0
2692 Male, age 74, both hemispheres 23.5
2693 Female, age 94, both hemispheres 23.2
1990 Female, age 91, right hemisphere 22.0
2245 Female, age 91, both hemispheres 21.8
2532 Female, age 72, left hemisphere 21.0
2250 Female, age 67, right hemisphere 20.9
1933 Female, age 85, both hemispheres 20.5
2018 Male, age 76, both hemispheres 18.7
2622 Female, age 67, right hemisphere 18.4
Perirhinal gyrus
nTPM: 22.9
1841 Female, age 85, right hemisphere 25.6
2521 Female, age 94, right hemisphere 23.9
1847 Female, age 91, left hemisphere 22.7
1794 Male, age 80, right hemisphere 21.6
2848 Male, age 76, right hemisphere 20.8
Subiculum
nTPM: 21.4
2438 Female, age 94, left hemisphere 26.9
1901 Male, age 80, both hemispheres 22.6
1977 Female, age 85, both hemispheres 21.6
2042 Male, age 76, both hemispheres 19.9
2619 Male, age 74, both hemispheres 18.9
2729 Female, age 91, right hemisphere 18.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 11.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.2
Samples: 197

Max nTPM: 16.6
Min nTPM: 5.0
Std nTPM: 1.6
Median nTPM: 11.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 16.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 15.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 15.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 15.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 15.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 14.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 14.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 14.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 14.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 14.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 14.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.6
FF:10169-103B7 60 years, female 57.1
FF:10153-102I9 76 years, female 32.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 23.8
Pig sample Sample description nTPM
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 25.5
Min nTPM: 22.0
Sample A Female 25.5
Sample B Female 22.7
Sample C Male 22.0
Sample D Male 22.2
Dorsal hippocampus
nTPM: 21.3
Samples: 4

Max nTPM: 22.5
Min nTPM: 19.5
Sample A Female 21.8
Sample B Female 22.5
Sample C Male 21.3
Sample D Male 19.5
Entorhinal cortex
nTPM: 23.9
Samples: 4

Max nTPM: 24.9
Min nTPM: 23.0
Sample A Female 24.4
Sample B Female 24.9
Sample C Male 23.0
Sample D Male 23.1
Ventral hippocampus
nTPM: 20.1
Samples: 4

Max nTPM: 22.8
Min nTPM: 17.9
Sample A Female 19.7
Sample B Female 19.8
Sample C Male 17.9
Sample D Male 22.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 23.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.0
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.6
Sample A Male 23.3
Sample B Male 24.5
Sample C Female 20.6
Sample D Female 23.6
Hippocampal formation
nTPM: 20.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 18.2
Sample A Male 21.4
Sample B Male 20.9
Sample C Female 22.8
Sample D Female 18.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 12.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.7
276274 Antisense, RP_040609_01_D07, Mouse strain C57BL/6J (56 days, male) 12.7
227749 Antisense, RP_040609_01_D07, Mouse strain C57BL/6J (56 days, male) 11.4

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