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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:88.8 nTPM
GTEx:88.8 nTPM
FANTOM5:439.7 Scaled Tags Per Million
Pig:58.0 nTPM
Mouse:245.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 88.8
Samples: 105

Max nTPM: 213.0
Min nTPM: 54.9
Std nTPM: 25.4
Median nTPM: 0.0
218_1 71 years, female 213.0
173_1 67 years, male 188.9
308_1 70 years, female 164.7
495_1 57 years, female 145.9
139_1 64 years, female 145.0
317_1 60 years, male 141.5
384_1 83 years, male 126.8
42_1 85 years, male 122.4
43_1 64 years, female 117.7
119_1 70 years, female 116.4
386_1 76 years, male 114.9
117_1 61 years, male 112.6
6_1 73 years, female 111.8
17_1 71 years, male 111.2
347_1 72 years, male 111.0
41_1 94 years, female 110.1
89_1 63 years, male 107.8
490_1 67 years, female 106.7
307_1 66 years, female 105.3
447_1 81 years, male 104.5
35_1 74 years, female 104.4
177_1 74 years, male 104.1
322_1 76 years, male 104.0
120_1 70 years, female 103.1
491_1 89 years, female 102.9
375_1 74 years, female 100.3
137_1 83 years, male 98.8
315_1 62 years, female 96.1
99_1 64 years, male 95.4
145_1 84 years, male 94.8
162_1 79 years, female 94.8
413_1 59 years, female 94.7
379_1 60 years, male 92.9
237_1 82 years, male 92.6
414_1 84 years, female 92.5
295_1 61 years, female 91.9
115_1 83 years, male 89.6
189_1 76 years, male 89.6
324_1 76 years, male 88.2
350_1 84 years, female 87.8
406_1 79 years, male 86.7
2_1 77 years, female 85.8
321_1 62 years, female 85.5
266_1 85 years, male 85.4
415_1 77 years, female 85.3
246_1 77 years, male 83.8
404_1 82 years, female 83.8
109_1 81 years, female 83.5
81_1 67 years, male 82.6
142_1 61 years, female 82.6
396_1 62 years, male 82.6
348_1 84 years, male 82.1
9_1 66 years, female 81.3
126_1 63 years, male 80.9
172_1 72 years, female 80.9
32_1 67 years, male 80.8
251_1 78 years, male 80.2
480_1 63 years, male 80.1
4_1 88 years, female 79.3
316_1 62 years, male 78.9
319_1 81 years, male 78.5
149_1 88 years, male 78.4
254_1 77 years, female 78.1
499_1 55 years, female 77.9
311_1 78 years, male 77.5
354_1 81 years, female 77.4
163_1 78 years, male 76.9
468_1 89 years, male 76.7
293_1 68 years, female 75.6
314_1 67 years, male 75.4
18_1 88 years, male 75.2
243_1 75 years, male 75.2
355_1 70 years, female 74.5
405_1 91 years, male 74.5
517_1 88 years, male 74.5
526_1 61 years, male 74.5
425_1 59 years, female 74.3
452_1 88 years, female 73.5
313_1 79 years, female 73.4
389_1 86 years, female 72.9
265_1 87 years, male 71.3
501_1 88 years, male 70.9
503_1 68 years, male 70.9
466_1 57 years, female 70.3
291_1 76 years, male 70.1
153_1 70 years, female 70.0
229_1 69 years, female 69.7
376_1 75 years, female 69.5
518_1 75 years, female 69.3
217_1 76 years, male 68.4
292_1 71 years, male 67.6
506_1 65 years, male 66.9
349_1 83 years, male 66.6
356_1 87 years, female 66.4
318_1 68 years, male 66.1
377_1 82 years, female 66.0
351_1 91 years, male 65.9
320_1 89 years, female 65.4
353_1 82 years, female 65.2
288_1 66 years, female 65.1
335_1 73 years, female 65.1
394_1 75 years, female 62.4
286_1 68 years, female 57.0
264_1 73 years, female 55.7
352_1 62 years, male 54.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 439.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 439.7
FF:10030-101E3 24-65 years, mixed 439.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.0
Pig sample Sample description nTPM
Retina
nTPM: 58.0
Samples: 4

Max nTPM: 66.7
Min nTPM: 50.2
Sample A Female 50.2
Sample B Female 66.7
Sample C Male 62.3
Sample D Male 52.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 245.8
Mouse sample Sample description nTPM
Retina
nTPM: 245.8
Samples: 4

Max nTPM: 295.1
Min nTPM: 188.3
Sample A Male 275.9
Sample B Male 223.9
Sample C Female 188.3
Sample D Female 295.1

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by the Knut & Alice Wallenberg Foundation.