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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:142.9 nTPM
HPA:142.9 nTPM
GTEx:111.9 nTPM
FANTOM5:455.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA029159Antibody HPA029160Antibody CAB000108Antibody CAB001950
Glandular cells HighHighHighMedium









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 142.9
overview
Male, age 65
Small intestine sample 232
nTPM: 136.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 135.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 131.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 169.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 111.9
Samples: 187

Max nTPM: 197.2
Min nTPM: 60.2
Std nTPM: 23.6
Median nTPM: 108.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 197.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 180.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 179.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 172.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 166.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 164.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 161.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 161.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 158.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 158.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 156.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 153.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 152.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 151.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 151.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 147.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 147.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 147.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 146.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 144.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 143.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 142.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 141.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 141.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 140.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 140.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 139.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 139.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 137.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 137.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 136.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 135.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 134.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 133.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 132.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 132.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 130.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 130.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 130.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 129.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 129.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 129.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 128.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 126.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 125.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 125.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 124.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 124.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 123.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 122.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 122.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 121.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 119.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 119.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 119.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 119.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 118.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 118.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 117.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 117.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 117.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 116.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 116.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 116.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 115.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 115.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 115.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 114.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 113.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 112.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 112.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 112.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 112.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 111.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 111.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 111.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 111.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 111.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 111.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 110.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 110.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 110.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 110.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 110.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 110.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 110.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 110.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 110.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 110.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 110.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 108.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 108.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 108.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 108.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 108.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 107.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 107.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 107.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 107.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 107.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 105.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 105.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 105.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 105.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 105.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 104.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 104.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 104.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 104.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 104.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 104.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 103.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 103.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 103.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 102.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 102.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 102.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 102.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 101.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 101.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 101.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 100.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 100.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 100.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 99.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 99.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 99.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 99.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 99.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 99.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 98.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 98.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 97.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 97.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 97.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 96.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 96.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 96.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 96.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 95.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 95.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 95.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 95.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 95.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 94.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 94.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 94.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 93.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 92.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 92.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 92.0
GTEX-1192X-2526-SM-59868 50-59 years, male 91.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 90.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 90.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 90.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 90.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 89.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 89.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 89.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 89.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 88.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 88.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 87.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 87.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 87.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 87.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 86.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 86.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 86.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 86.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 86.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 85.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 85.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 85.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 85.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 85.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 84.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 81.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 80.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 80.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 76.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 76.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 70.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 70.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 66.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 61.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 60.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 455.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 455.7
FF:10024-101D6 15,40,85 years, mixed 455.7

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