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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.9 nTPM
HPA:104.9 nTPM
GTEx:78.2 nTPM
FANTOM5:263.8 Scaled Tags Per Million
Pig:153.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 104.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 93.6
1981 Female, age 72, midline 108.2
2565 Male, age 75, midline 105.3
2048 Male, age 55, midline 89.5
2194 Female, age 79, both hemispheres 83.7
2816 Male, age 47, midline 81.5
Cervical spinal cord, dorsal horn
nTPM: 102.6
2296 Male, age 66, both hemispheres 130.2
2069 Male, age 47, both hemispheres 115.0
2173 Female, age 72, unknown 101.7
1877 Male, age 55, unknown 96.2
2721 Male, age 90, both hemispheres 88.5
2297 Male, age 75, both hemispheres 84.1
Cervical spinal cord, ventral horn
nTPM: 104.9
2480 Male, age 75, both hemispheres 132.2
2098 Female, age 72, unknown 126.4
2809 Male, age 90, both hemispheres 125.9
2295 Male, age 66, both hemispheres 101.2
2068 Male, age 55, unknown 79.2
2820 Female, age 79, both hemispheres 64.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 78.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 78.2
Samples: 159

Max nTPM: 129.4
Min nTPM: 45.2
Std nTPM: 12.0
Median nTPM: 78.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 129.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 114.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 107.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 103.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 102.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 99.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 98.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 95.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 95.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 94.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 94.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 92.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 92.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 92.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 91.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 91.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 90.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 90.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 90.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 90.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 90.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 90.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 89.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 89.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 89.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 88.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 88.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 88.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 88.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 88.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 87.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 87.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 87.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 87.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 86.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 86.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 85.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 85.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 84.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 83.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 83.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 83.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 83.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 83.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 82.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 82.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 82.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 81.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 81.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 81.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 81.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 81.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 81.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 81.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 81.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 80.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 80.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 80.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 80.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 80.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 80.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 79.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 79.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 79.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 79.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 78.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 78.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 78.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 78.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 78.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 78.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 78.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 78.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 77.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 77.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 77.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 77.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 77.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 77.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 77.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 77.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 76.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 76.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 76.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 76.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 75.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 75.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 75.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 75.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 75.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 75.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 75.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 75.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 74.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 74.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 74.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 74.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 73.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 73.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 73.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 73.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 73.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 73.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 72.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 72.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 72.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 72.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 71.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 71.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 71.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 71.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 70.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 70.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 70.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 69.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 69.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 69.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 69.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 69.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 68.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 68.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 67.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 67.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 66.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 66.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 65.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 65.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 65.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 65.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 65.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 64.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 64.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 64.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 64.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 63.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 63.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 63.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 63.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 63.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 59.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 59.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 57.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 56.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 56.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 55.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 52.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 51.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 45.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 263.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 263.8
FF:10181-103D1 60 years, female 272.8
FF:10159-103A6 76 years, female 254.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 153.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 140.8
Samples: 4

Max nTPM: 162.5
Min nTPM: 121.6
Sample A Female 134.4
Sample B Female 144.8
Sample C Male 162.5
Sample D Male 121.6
Ventral spinal cord
nTPM: 153.9
Samples: 4

Max nTPM: 159.9
Min nTPM: 140.2
Sample A Female 159.9
Sample B Female 159.2
Sample C Male 140.2
Sample D Male 156.4

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