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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:149.2 nTPM
HPA:109.7 nTPM
GTEx:149.2 nTPM
FANTOM5:127.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018852Antibody CAB016722
Glandular cells Not detectedNot detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.7
overview
Male, age 65
Small intestine sample 232
nTPM: 71.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 102.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 132.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 131.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 149.2
Samples: 187

Max nTPM: 561.6
Min nTPM: 20.6
Std nTPM: 91.0
Median nTPM: 127.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 561.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 544.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 523.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 478.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 377.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 343.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 337.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 323.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 305.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 299.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 298.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 285.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 278.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 267.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 264.7
GTEX-1192X-2526-SM-59868 50-59 years, male 257.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 257.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 256.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 255.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 244.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 243.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 240.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 239.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 231.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 230.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 229.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 227.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 226.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 226.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 226.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 225.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 220.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 218.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 218.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 217.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 217.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 215.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 215.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 214.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 213.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 212.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 208.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 206.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 201.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 197.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 196.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 196.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 196.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 195.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 195.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 195.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 190.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 189.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 188.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 185.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 185.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 181.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 179.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 178.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 175.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 174.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 173.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 169.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 168.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 166.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 166.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 163.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 162.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 159.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 157.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 155.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 154.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 151.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 149.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 149.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 147.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 146.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 145.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 143.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 141.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 139.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 139.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 137.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 137.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 135.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 134.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 133.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 132.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 130.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 128.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 128.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 128.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 127.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 127.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 127.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 127.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 125.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 125.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 125.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 124.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 121.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 121.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 118.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 117.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 117.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 117.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 117.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 117.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 117.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 116.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 115.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 115.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 113.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 112.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 108.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 107.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 106.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 106.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 105.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 104.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 104.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 103.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 103.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 103.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 101.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 101.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 100.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 100.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 98.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 95.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 93.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 93.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 93.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 92.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 92.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 89.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 88.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 88.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 88.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 88.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 86.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 83.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 83.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 83.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 79.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 79.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 77.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 75.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 75.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 75.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 75.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 74.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 73.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 72.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 71.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 70.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 69.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 68.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 64.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 64.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 64.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 61.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 60.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 60.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 59.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 58.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 57.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 56.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 54.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 53.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 53.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 52.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 52.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 51.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 49.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 47.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 47.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 45.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 45.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 43.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 41.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 39.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 39.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 37.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 34.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 34.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 20.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

127.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 127.6
FF:10024-101D6 15,40,85 years, mixed 127.6

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