HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.7 nTPM
HPA Brain:97.3 nTPM
GTEx:53.7 nTPM
FANTOM5:118.0 Scaled Tags Per Million
Pig:126.9 nTPM
Mouse:39.9 nTPM
Allen mouse:4.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 97.3
Sample id Sample description nTPM
Hippocampus
nTPM: 55.9
1898 Male, age 80, left hemisphere 79.5
1855 Male, age 76, left hemisphere 58.8
2621 Female, age 67, right hemisphere 58.0
2148 Female, age 91, left hemisphere 51.1
1911 Female, age 85, right hemisphere 45.4
2529 Female, age 94, left hemisphere 42.3
Dentate gyrus
nTPM: 60.1
1927 Female, age 91, both hemispheres 84.1
2528 Male, age 74, both hemispheres 69.3
2010 Male, age 76, both hemispheres 60.4
2246 Female, age 85, both hemispheres 55.3
2531 Female, age 67, both hemispheres 52.1
2530 Female, age 94, left hemisphere 39.3
Entorhinal gyrus
nTPM: 72.0
2764 Male, age 80, right hemisphere 88.9
1938 Female, age 85, left hemisphere 87.1
2613 Female, age 94, left hemisphere 82.8
1787 Male, age 76, left hemisphere 69.1
2686 Male, age 75, right hemisphere 56.5
2117 Female, age 91, right hemisphere 47.9
Hippocampus, CA1
nTPM: 61.6
1873 Female, age 85, both hemispheres 71.3
2749 Male, age 80, left hemisphere 68.2
2045 Male, age 76, both hemispheres 63.1
2527 Male, age 74, both hemispheres 60.8
2082 Female, age 91, right hemisphere 44.3
Hippocampus, CA2
nTPM: 60.2
1892 Male, age 76, both hemispheres 89.7
1963 Male, age 80, left hemisphere 70.1
2249 Male, age 74, both hemispheres 59.0
2437 Female, age 94, left hemisphere 54.9
2113 Female, age 91, right hemisphere 43.9
1940 Female, age 85, left hemisphere 43.8
Hippocampus, CA3
nTPM: 56.2
1867 Male, age 76, both hemispheres 68.8
2436 Male, age 74, both hemispheres 59.7
2620 Female, age 94, left hemisphere 56.3
1891 Female, age 85, both hemispheres 55.9
2137 Male, age 80, left hemisphere 50.8
2861 Female, age 67, both hemispheres 46.0
Parahippocampal cortex
nTPM: 78.9
1850 Male, age 80, both hemispheres 103.0
2250 Female, age 67, right hemisphere 95.3
1990 Female, age 91, right hemisphere 92.3
2693 Female, age 94, both hemispheres 87.7
2532 Female, age 72, left hemisphere 80.8
1933 Female, age 85, both hemispheres 80.4
2245 Female, age 91, both hemispheres 75.3
2018 Male, age 76, both hemispheres 61.1
2622 Female, age 67, right hemisphere 59.7
2692 Male, age 74, both hemispheres 53.5
Perirhinal gyrus
nTPM: 97.3
1847 Female, age 91, left hemisphere 113.3
1841 Female, age 85, right hemisphere 102.5
1794 Male, age 80, right hemisphere 95.3
2848 Male, age 76, right hemisphere 93.0
2521 Female, age 94, right hemisphere 82.6
Subiculum
nTPM: 54.3
1977 Female, age 85, both hemispheres 85.4
2619 Male, age 74, both hemispheres 59.2
1901 Male, age 80, both hemispheres 52.5
2438 Female, age 94, left hemisphere 50.0
2042 Male, age 76, both hemispheres 40.3
2729 Female, age 91, right hemisphere 38.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 53.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.7
Samples: 255

Max nTPM: 183.2
Min nTPM: 8.5
Std nTPM: 29.3
Median nTPM: 48.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 183.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 156.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 146.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 129.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 126.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 119.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 117.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 116.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 114.5
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 114.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 113.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 118.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 118.0
FF:10169-103B7 60 years, female 167.2
FF:10153-102I9 76 years, female 68.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 126.9
Pig sample Sample description nTPM
Subiculum
nTPM: 126.9
Samples: 4

Max nTPM: 165.0
Min nTPM: 104.1
Sample A Female 165.0
Sample B Female 125.0
Sample C Male 113.5
Sample D Male 104.1
Dorsal hippocampus
nTPM: 105.7
Samples: 4

Max nTPM: 131.1
Min nTPM: 75.9
Sample A Female 131.1
Sample B Female 111.0
Sample C Male 104.9
Sample D Male 75.9
Entorhinal cortex
nTPM: 106.3
Samples: 4

Max nTPM: 116.0
Min nTPM: 90.7
Sample A Female 106.3
Sample B Female 116.0
Sample C Male 112.3
Sample D Male 90.7
Ventral hippocampus
nTPM: 104.5
Samples: 4

Max nTPM: 118.0
Min nTPM: 86.9
Sample A Female 118.0
Sample B Female 101.0
Sample C Male 112.1
Sample D Male 86.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 39.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.9
Samples: 4

Max nTPM: 40.8
Min nTPM: 39.0
Sample A Male 39.0
Sample B Male 40.3
Sample C Female 40.8
Sample D Female 39.5
Hippocampal formation
nTPM: 36.1
Samples: 4

Max nTPM: 40.0
Min nTPM: 32.6
Sample A Male 40.0
Sample B Male 36.9
Sample C Female 35.0
Sample D Female 32.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
583576 Antisense, RP_040831_02_G09, Mouse strain C57BL/6J (56 days, male) 4.8

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