HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:86.0 nTPM
GTEx:16.0 nTPM
FANTOM5:79.8 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:21.5 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 86.0
Sample id Sample description nTPM
Hippocampus
nTPM: 59.3
1898 Male, age 80, left hemisphere 80.6
2148 Female, age 91, left hemisphere 72.4
2621 Female, age 67, right hemisphere 63.1
1855 Male, age 76, left hemisphere 55.9
2529 Female, age 94, left hemisphere 44.3
1911 Female, age 85, right hemisphere 39.8
Dentate gyrus
nTPM: 59.8
2530 Female, age 94, left hemisphere 73.9
1927 Female, age 91, both hemispheres 68.0
2246 Female, age 85, both hemispheres 63.0
2010 Male, age 76, both hemispheres 60.2
2531 Female, age 67, both hemispheres 59.0
2528 Male, age 74, both hemispheres 34.9
Entorhinal gyrus
nTPM: 46.2
2764 Male, age 80, right hemisphere 67.2
1938 Female, age 85, left hemisphere 50.5
1787 Male, age 76, left hemisphere 45.8
2686 Male, age 75, right hemisphere 41.1
2613 Female, age 94, left hemisphere 37.4
2117 Female, age 91, right hemisphere 35.2
Hippocampus, CA1
nTPM: 79.3
2749 Male, age 80, left hemisphere 157.8
2045 Male, age 76, both hemispheres 77.0
2082 Female, age 91, right hemisphere 62.4
2527 Male, age 74, both hemispheres 50.4
1873 Female, age 85, both hemispheres 48.7
Hippocampus, CA2
nTPM: 55.8
1892 Male, age 76, both hemispheres 69.8
2437 Female, age 94, left hemisphere 61.1
1940 Female, age 85, left hemisphere 60.9
1963 Male, age 80, left hemisphere 56.3
2113 Female, age 91, right hemisphere 51.8
2249 Male, age 74, both hemispheres 35.1
Hippocampus, CA3
nTPM: 86.0
2137 Male, age 80, left hemisphere 173.4
2620 Female, age 94, left hemisphere 110.1
2861 Female, age 67, both hemispheres 87.1
1867 Male, age 76, both hemispheres 82.7
2436 Male, age 74, both hemispheres 34.0
1891 Female, age 85, both hemispheres 28.6
Parahippocampal cortex
nTPM: 65.2
2245 Female, age 91, both hemispheres 110.2
2622 Female, age 67, right hemisphere 90.5
2532 Female, age 72, left hemisphere 83.9
2693 Female, age 94, both hemispheres 74.7
1933 Female, age 85, both hemispheres 61.0
1850 Male, age 80, both hemispheres 58.4
2250 Female, age 67, right hemisphere 56.4
2018 Male, age 76, both hemispheres 49.8
1990 Female, age 91, right hemisphere 37.2
2692 Male, age 74, both hemispheres 29.7
Perirhinal gyrus
nTPM: 67.3
2521 Female, age 94, right hemisphere 90.9
1794 Male, age 80, right hemisphere 75.6
1847 Female, age 91, left hemisphere 71.3
1841 Female, age 85, right hemisphere 56.0
2848 Male, age 76, right hemisphere 42.7
Subiculum
nTPM: 50.9
1901 Male, age 80, both hemispheres 97.5
1977 Female, age 85, both hemispheres 46.2
2042 Male, age 76, both hemispheres 46.2
2438 Female, age 94, left hemisphere 42.3
2729 Female, age 91, right hemisphere 40.0
2619 Male, age 74, both hemispheres 33.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 16.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.0
Samples: 255

Max nTPM: 84.9
Min nTPM: 0.6
Std nTPM: 12.7
Median nTPM: 13.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 84.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 69.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 64.0
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 54.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 53.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 51.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 50.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 49.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 47.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 45.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 45.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.8
FF:10169-103B7 60 years, female 106.9
FF:10153-102I9 76 years, female 52.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 38.9
Pig sample Sample description nTPM
Subiculum
nTPM: 32.2
Samples: 4

Max nTPM: 42.2
Min nTPM: 25.9
Sample A Female 42.2
Sample B Female 25.9
Sample C Male 33.7
Sample D Male 27.1
Dorsal hippocampus
nTPM: 37.8
Samples: 4

Max nTPM: 46.9
Min nTPM: 26.2
Sample A Female 46.9
Sample B Female 46.3
Sample C Male 26.2
Sample D Male 31.9
Entorhinal cortex
nTPM: 34.5
Samples: 4

Max nTPM: 41.2
Min nTPM: 25.0
Sample A Female 41.2
Sample B Female 25.0
Sample C Male 34.3
Sample D Male 37.6
Ventral hippocampus
nTPM: 38.9
Samples: 4

Max nTPM: 47.6
Min nTPM: 24.9
Sample A Female 39.1
Sample B Female 24.9
Sample C Male 47.6
Sample D Male 43.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 21.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.4
Samples: 4

Max nTPM: 22.2
Min nTPM: 12.7
Sample A Male 17.2
Sample B Male 21.5
Sample C Female 12.7
Sample D Female 22.2
Hippocampal formation
nTPM: 21.5
Samples: 4

Max nTPM: 26.1
Min nTPM: 18.1
Sample A Male 18.1
Sample B Male 26.1
Sample C Female 20.8
Sample D Female 20.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
73617492 Antisense, RP_051130_01_G01, Mouse strain C57BL/6J (56 days, male) 1.2
74581375 Antisense, RP_051130_01_G01, Mouse strain C57BL/6J (56 days, male) 1.0

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