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  • MT-ND5
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:12820.9 nTPM
HPA Brain:23406.0 nTPM
GTEx:12820.9 nTPM
Pig:12035.1 nTPM
Mouse:6335.5 nTPM
Allen mouse:25.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23406.0
Sample id Sample description nTPM
Amygdala
nTPM: 21269.9
2695 Female, age 67, right hemisphere 44159.6
2514 Male, age 75, right hemisphere 19586.8
2814 Male, age 76, right hemisphere 18535.4
2517 Female, age 94, left hemisphere 17413.0
1987 Female, age 91, left hemisphere 6654.6
Basal amygdala
nTPM: 23406.0
2827 Female, age 67, right hemisphere 45009.9
2609 Male, age 75, right hemisphere 28603.5
2685 Female, age 94, left hemisphere 19866.2
2243 Female, age 91, right hemisphere 19314.3
1955 Male, age 76, both hemispheres 17331.1
2110 Male, age 80, left hemisphere 10311.0
Central amygdala
nTPM: 22730.0
2826 Female, age 94, left hemisphere 36811.1
2701 Female, age 91, right hemisphere 23766.7
2239 Male, age 80, left hemisphere 19618.7
2515 Male, age 75, right hemisphere 17694.2
1905 Male, age 76, both hemispheres 15759.4
Corticomedial amygdala
nTPM: 20650.2
2535 Female, age 67, right hemisphere 36727.1
2240 Male, age 76, both hemispheres 26618.8
2242 Female, age 91, right hemisphere 18667.8
2428 Male, age 75, right hemisphere 17753.9
2829 Male, age 80, left hemisphere 13114.5
2429 Female, age 94, left hemisphere 11019.3
Lateral amygdala
nTPM: 22784.5
2830 Female, age 67, right hemisphere 42450.6
2534 Female, age 94, left hemisphere 23954.5
2516 Male, age 75, right hemisphere 21229.8
2256 Male, age 80, left hemisphere 18744.3
2255 Female, age 91, right hemisphere 16558.4
1883 Male, age 76, both hemispheres 13769.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12820.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 12820.9
Samples: 181

Max nTPM: 93251.3
Min nTPM: 1658.5
Std nTPM: 12151.6
Median nTPM: 8513.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 93251.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 64895.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 62440.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 49862.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 45968.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 42131.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 41993.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 41076.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 38329.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 36142.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 33221.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 32523.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 31538.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 30844.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 29174.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 25446.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 23243.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 23164.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 23112.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 23084.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 22865.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 22798.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 22498.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 22427.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 22350.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 22239.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 21895.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 21889.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 21705.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 20496.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 20305.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 20256.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 20081.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 19592.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 18861.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 18822.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 17634.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 17192.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 17049.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 16979.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 16879.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 16877.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 16691.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 16537.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 16347.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 15702.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 15699.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 15597.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 14710.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 14440.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 13997.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 13936.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 13932.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 13914.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 13428.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 13425.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 13150.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 13060.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 12981.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 12795.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 12459.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 12237.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 12225.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 12176.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 12175.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 12121.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 11912.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 11793.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 11408.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 11294.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 11251.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 11056.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 10956.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 10824.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 10567.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 10237.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 10206.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 10196.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10177.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 9931.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 9841.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 9799.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 9645.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 9428.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 9286.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 9112.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 9003.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 8821.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 8817.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 8728.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 8513.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 8480.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 8353.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 8309.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 8177.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 8143.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 7954.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 7875.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 7803.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 7797.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 7758.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 7711.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 7676.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 7633.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 7605.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 7499.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 7355.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7350.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 7340.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 7291.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 7137.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 7125.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 7115.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 7053.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 7014.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 6981.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 6835.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 6772.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 6771.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 6741.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6700.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 6618.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 6602.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 6570.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 6498.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 6433.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 6393.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 6331.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 6317.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 6281.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6141.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 6114.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 6049.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 5883.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 5781.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 5740.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5677.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 5659.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 5646.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 5519.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 5469.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 5465.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 5460.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 5372.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 5109.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 5099.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 4952.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 4933.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 4888.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4813.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 4784.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 4771.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4762.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 4732.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 4656.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 4574.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 4425.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 4367.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 4276.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 4262.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 4260.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 4232.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 4153.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 3938.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 3591.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 3576.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 3528.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3510.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3477.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3067.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 3061.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2783.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 2625.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2483.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 2436.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 2401.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2324.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 2226.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1972.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1758.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1658.5
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AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12035.1
Pig sample Sample description nTPM
Amygdala
nTPM: 12035.1
Samples: 4

Max nTPM: 14695.2
Min nTPM: 6306.6
Sample A Female 14695.2
Sample B Female 14523.5
Sample C Male 12615.0
Sample D Male 6306.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6335.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 6335.5
Samples: 4

Max nTPM: 7336.6
Min nTPM: 5095.5
Sample A Male 5095.5
Sample B Male 6492.9
Sample C Female 7336.6
Sample D Female 6416.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.9
75080269 Antisense, RP_060412_06_H09, Mouse strain C57BL/6J (56 days, male) 26.9
73906215 Antisense, RP_051212_04_H07, Mouse strain C57BL/6J (56 days, male) 25.0

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