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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • BAD
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:104.6 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:26.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA028185Antibody HPA062105Antibody CAB004205
Glial cells MediumNot detectedMedium
Neuronal cells HighLowMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 104.6
Samples: 300

Max nTPM: 255.3
Min nTPM: 46.8
Std nTPM: 33.6
Median nTPM: 98.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 255.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 249.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 238.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 207.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 203.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 201.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 189.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 186.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 182.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 180.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 179.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 176.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 173.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 172.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 168.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 168.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 166.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 165.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 164.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 164.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 160.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 160.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 159.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 159.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 159.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 152.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 152.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 151.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 151.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 150.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 147.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 146.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 145.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 144.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 143.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 140.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 140.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 139.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 139.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 137.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 137.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 137.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 136.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 135.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 135.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 134.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 134.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 134.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 134.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 134.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 133.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 132.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 132.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 131.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 130.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 129.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 128.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 128.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 127.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 127.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 126.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 125.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 125.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 124.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 124.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 123.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 122.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 122.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 122.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 122.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 121.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 121.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 120.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 120.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 120.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 119.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 119.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 119.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 117.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 117.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 117.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 116.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 116.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 116.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 116.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 115.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 115.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 115.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 115.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 115.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 113.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 113.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 113.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 112.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 112.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 112.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 112.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 111.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 111.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 110.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 110.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 109.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 109.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 109.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 108.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 108.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 108.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 108.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 107.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 107.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 107.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 106.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 106.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 106.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 106.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 106.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 105.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 105.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 105.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 105.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 105.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 105.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 104.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 104.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 104.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 104.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 103.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 103.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 102.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 102.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 102.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 102.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 101.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 101.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 101.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 101.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 101.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 101.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 101.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 101.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 101.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 100.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 100.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 100.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 100.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 100.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 99.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 99.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 98.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 98.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 98.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 97.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 96.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 96.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 96.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 96.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 96.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 95.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 95.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 95.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 94.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 94.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 94.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 94.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 94.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 93.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 93.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 93.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 93.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 93.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 93.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 93.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 93.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 92.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 92.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 92.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 92.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 91.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 91.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 91.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 91.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 91.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 91.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 91.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 90.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 90.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 90.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 89.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 89.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 89.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 88.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 88.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 88.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 88.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 88.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 87.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 87.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 87.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 86.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 86.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 86.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 86.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 86.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 85.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 85.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 85.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 85.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 85.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 85.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 85.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 84.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 84.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 84.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 84.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 84.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 83.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 83.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 83.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 82.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 82.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 82.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 82.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 82.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 81.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 81.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 80.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 80.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 79.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 79.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 78.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 78.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 78.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 78.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 78.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 78.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 77.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 77.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 77.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 77.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 77.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 76.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 76.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 76.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 76.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 75.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 75.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 75.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 75.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 74.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 74.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 74.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 74.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 74.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 74.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 73.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 73.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 72.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 72.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 72.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 72.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 71.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 71.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 70.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 69.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 69.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 69.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 69.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 69.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 69.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 68.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 68.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 68.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 68.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 68.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 67.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 67.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 67.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 66.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 66.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 66.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 65.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 64.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 63.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 63.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 63.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 62.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 62.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 61.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 59.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 58.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 58.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 57.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 54.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 54.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 53.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 52.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 47.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 46.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.5
FF:10164-103B2 76 years, female 20.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.8
Pig sample Sample description nTPM
Caudate
nTPM: 26.9
Samples: 4

Max nTPM: 32.2
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 29.2
Sample C Male 32.2
Sample D Male 23.6

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