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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
60.3
nTPM
Monaco:
104.0
nTPM
Schmiedel:
73.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.3
HPA sample
nTPM
gdT-cell nTPM: 33.7
Samples: 6
Max nTPM: 48.4
Min nTPM: 25.6
P10809_1007
25.6
P10809_1022
48.4
P10809_1041
36.6
P10809_1060
28.9
P10809_1077
32.7
P10809_1098
30.2
MAIT T-cell nTPM: 31.1
Samples: 6
Max nTPM: 36.7
Min nTPM: 28.2
P10809_1006
36.7
P10809_1024
33.1
P10809_1043
30.7
P10809_1062
28.2
P10809_1083
29.2
P10809_1097
28.5
Memory CD4 T-cell nTPM: 31.3
Samples: 6
Max nTPM: 41.4
Min nTPM: 24.8
P10809_1014
29.7
P10809_1026
26.4
P10809_1045
41.4
P10809_1064
24.8
P10809_1086
32.6
P10809_1113
32.8
Memory CD8 T-cell nTPM: 36.3
Samples: 5
Max nTPM: 41.5
Min nTPM: 28.6
P10809_1012
28.6
P10809_1027
37.5
P10809_1046
41.5
P10809_1065
36.9
P10809_1111
36.8
Naive CD4 T-cell nTPM: 26.8
Samples: 6
Max nTPM: 36.1
Min nTPM: 19.8
P10809_1015
19.8
P10809_1030
21.5
P10809_1049
30.8
P10809_1068
25.7
P10809_1085
36.1
P10809_1112
26.6
Naive CD8 T-cell nTPM: 28.4
Samples: 6
Max nTPM: 32.3
Min nTPM: 24.5
P10809_1016
24.5
P10809_1031
27.6
P10809_1050
27.9
P10809_1069
32.3
P10809_1087
31.4
P10809_1110
26.9
T-reg nTPM: 60.3
Samples: 6
Max nTPM: 75.0
Min nTPM: 47.1
P10809_1018
47.1
P10809_1037
54.7
P10809_1056
64.4
P10809_1075
61.6
P10809_1094
59.2
P10809_1106
75.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.0
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 62.1
Samples: 4
Max nTPM: 76.4
Min nTPM: 39.4
RHH5202_R3573
76.0
RHH5230_R3602
39.4
RHH5259_R3631
56.6
RHH5288_R3660
76.4
Effector memory CD8 T-cell nTPM: 104.0
Samples: 4
Max nTPM: 162.0
Min nTPM: 62.0
RHH5203_R3574
162.0
RHH5231_R3603
62.0
RHH5260_R3632
110.8
RHH5289_R3661
81.2
MAIT T-cell nTPM: 72.6
Samples: 4
Max nTPM: 101.2
Min nTPM: 56.7
RHH5233_R3605
72.3
RHH5205_R3576
101.2
RHH5262_R3634
60.0
RHH5297_R3663
56.7
Memory CD4 T-cell TFH nTPM: 69.1
Samples: 4
Max nTPM: 90.3
Min nTPM: 55.4
RHH5300_R3666
57.4
RHH5236_R3608
55.4
RHH5265_R3637
73.1
RHH5208_R3579
90.3
Memory CD4 T-cell Th1 nTPM: 62.8
Samples: 4
Max nTPM: 69.5
Min nTPM: 54.3
RHH5210_R3581
63.8
RHH5302_R3668
69.5
RHH5238_R3610
63.7
RHH5267_R3639
54.3
Memory CD4 T-cell Th1/Th17 nTPM: 75.7
Samples: 4
Max nTPM: 136.9
Min nTPM: 40.3
RHH5303_R3669
66.9
RHH5211_R3582
136.9
RHH5239_R3611
40.3
RHH5268_R3640
58.7
Memory CD4 T-cell Th17 nTPM: 73.6
Samples: 4
Max nTPM: 97.0
Min nTPM: 54.7
RHH5304_R3670
77.7
RHH5212_R3583
97.0
RHH5240_R3612
54.7
RHH5269_R3641
65.0
Memory CD4 T-cell Th2 nTPM: 75.7
Samples: 4
Max nTPM: 124.1
Min nTPM: 51.4
RHH5305_R3671
51.4
RHH5213_R3584
124.1
RHH5241_R3613
60.6
RHH5270_R3642
66.6
Naive CD4 T-cell nTPM: 46.8
Samples: 4
Max nTPM: 72.8
Min nTPM: 25.5
RHH5306_R3672
43.2
RHH5214_R3585
72.8
RHH5242_R3614
25.5
RHH5271_R3643
45.6
Naive CD8 T-cell nTPM: 56.7
Samples: 4
Max nTPM: 71.9
Min nTPM: 42.8
RHH5201_R3572
71.9
RHH5229_R3601
42.8
RHH5258_R3630
47.3
RHH5287_R3659
64.9
Non-Vd2 gdTCR nTPM: 93.3
Samples: 4
Max nTPM: 137.5
Min nTPM: 59.9
RHH5235_R3607
59.9
RHH5264_R3636
95.6
RHH5207_R3578
137.5
RHH5299_R3665
80.3
T-reg nTPM: 66.0
Samples: 4
Max nTPM: 108.2
Min nTPM: 48.9
RHH5301_R3667
52.8
RHH5237_R3609
48.9
RHH5266_R3638
53.9
RHH5209_R3580
108.2
Terminal effector memory CD4 T-cell nTPM: 72.0
Samples: 2
Max nTPM: 87.7
Min nTPM: 56.2
RHH5243_R3615
56.2
RHH5272_R3644
87.7
Terminal effector memory CD8 T-cell nTPM: 79.6
Samples: 4
Max nTPM: 93.0
Min nTPM: 63.2
RHH5232_R3604
63.2
RHH5204_R3575
93.0
RHH5261_R3633
84.8
RHH5296_R3662
77.2
Vd2 gdTCR nTPM: 78.7
Samples: 4
Max nTPM: 103.2
Min nTPM: 63.1
RHH5234_R3606
63.1
RHH5206_R3577
103.2
RHH5263_R3635
81.6
RHH5298_R3664
66.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
