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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.8
nTPM
Monaco:
243.9
nTPM
Schmiedel:
155.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.8
HPA sample
nTPM
gdT-cell nTPM: 30.8
Samples: 6
Max nTPM: 40.6
Min nTPM: 20.9
P10809_1007
40.6
P10809_1022
30.3
P10809_1041
31.1
P10809_1060
20.9
P10809_1077
30.4
P10809_1098
31.3
MAIT T-cell nTPM: 20.3
Samples: 6
Max nTPM: 43.3
Min nTPM: 10.9
P10809_1006
43.3
P10809_1024
13.5
P10809_1043
16.5
P10809_1062
17.1
P10809_1083
10.9
P10809_1097
20.6
Memory CD4 T-cell nTPM: 15.3
Samples: 6
Max nTPM: 24.5
Min nTPM: 10.4
P10809_1014
24.5
P10809_1026
10.4
P10809_1045
15.7
P10809_1064
10.4
P10809_1086
15.0
P10809_1113
15.5
Memory CD8 T-cell nTPM: 20.4
Samples: 5
Max nTPM: 28.6
Min nTPM: 13.9
P10809_1012
28.6
P10809_1027
22.9
P10809_1046
19.4
P10809_1065
13.9
P10809_1111
17.1
Naive CD4 T-cell nTPM: 12.7
Samples: 6
Max nTPM: 20.1
Min nTPM: 7.3
P10809_1015
20.1
P10809_1030
11.5
P10809_1049
7.3
P10809_1068
8.7
P10809_1085
12.1
P10809_1112
16.4
Naive CD8 T-cell nTPM: 19.8
Samples: 6
Max nTPM: 26.5
Min nTPM: 12.4
P10809_1016
26.5
P10809_1031
17.4
P10809_1050
19.9
P10809_1069
12.4
P10809_1087
23.4
P10809_1110
19.4
T-reg nTPM: 21.4
Samples: 6
Max nTPM: 35.9
Min nTPM: 14.7
P10809_1018
35.9
P10809_1037
19.2
P10809_1056
22.1
P10809_1075
20.8
P10809_1094
14.7
P10809_1106
15.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
243.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 156.6
Samples: 4
Max nTPM: 176.8
Min nTPM: 149.2
RHH5202_R3573
150.9
RHH5230_R3602
149.2
RHH5259_R3631
176.8
RHH5288_R3660
149.6
Effector memory CD8 T-cell nTPM: 208.3
Samples: 4
Max nTPM: 240.6
Min nTPM: 183.8
RHH5203_R3574
240.6
RHH5231_R3603
189.1
RHH5260_R3632
219.6
RHH5289_R3661
183.8
MAIT T-cell nTPM: 188.1
Samples: 4
Max nTPM: 237.5
Min nTPM: 151.0
RHH5233_R3605
176.4
RHH5205_R3576
237.5
RHH5262_R3634
187.5
RHH5297_R3663
151.0
Memory CD4 T-cell TFH nTPM: 128.1
Samples: 4
Max nTPM: 158.7
Min nTPM: 74.3
RHH5300_R3666
134.9
RHH5236_R3608
74.3
RHH5265_R3637
144.6
RHH5208_R3579
158.7
Memory CD4 T-cell Th1 nTPM: 157.7
Samples: 4
Max nTPM: 198.3
Min nTPM: 125.4
RHH5210_R3581
125.4
RHH5302_R3668
147.2
RHH5238_R3610
198.3
RHH5267_R3639
160.0
Memory CD4 T-cell Th1/Th17 nTPM: 147.7
Samples: 4
Max nTPM: 176.5
Min nTPM: 116.3
RHH5303_R3669
116.3
RHH5211_R3582
148.8
RHH5239_R3611
176.5
RHH5268_R3640
149.1
Memory CD4 T-cell Th17 nTPM: 150.6
Samples: 4
Max nTPM: 165.2
Min nTPM: 138.4
RHH5304_R3670
140.1
RHH5212_R3583
138.4
RHH5240_R3612
165.2
RHH5269_R3641
158.6
Memory CD4 T-cell Th2 nTPM: 145.0
Samples: 4
Max nTPM: 161.6
Min nTPM: 126.0
RHH5305_R3671
158.1
RHH5213_R3584
134.4
RHH5241_R3613
126.0
RHH5270_R3642
161.6
Naive CD4 T-cell nTPM: 110.5
Samples: 4
Max nTPM: 143.1
Min nTPM: 83.2
RHH5306_R3672
103.6
RHH5214_R3585
83.2
RHH5242_R3614
112.0
RHH5271_R3643
143.1
Naive CD8 T-cell nTPM: 114.3
Samples: 4
Max nTPM: 122.1
Min nTPM: 104.9
RHH5201_R3572
104.9
RHH5229_R3601
112.9
RHH5258_R3630
122.1
RHH5287_R3659
117.1
Non-Vd2 gdTCR nTPM: 243.9
Samples: 4
Max nTPM: 302.0
Min nTPM: 210.7
RHH5235_R3607
237.9
RHH5264_R3636
210.7
RHH5207_R3578
302.0
RHH5299_R3665
225.0
T-reg nTPM: 126.2
Samples: 4
Max nTPM: 163.3
Min nTPM: 101.7
RHH5301_R3667
138.0
RHH5237_R3609
101.7
RHH5266_R3638
163.3
RHH5209_R3580
101.9
Terminal effector memory CD4 T-cell nTPM: 187.5
Samples: 2
Max nTPM: 195.0
Min nTPM: 179.9
RHH5243_R3615
195.0
RHH5272_R3644
179.9
Terminal effector memory CD8 T-cell nTPM: 242.7
Samples: 4
Max nTPM: 256.7
Min nTPM: 213.8
RHH5232_R3604
249.7
RHH5204_R3575
213.8
RHH5261_R3633
250.4
RHH5296_R3662
256.7
Vd2 gdTCR nTPM: 192.6
Samples: 4
Max nTPM: 203.9
Min nTPM: 182.3
RHH5234_R3606
182.3
RHH5206_R3577
194.2
RHH5263_R3635
203.9
RHH5298_R3664
189.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
