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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
43.8
nTPM
Monaco:
88.9
nTPM
Schmiedel:
148.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.8
HPA sample
nTPM
gdT-cell nTPM: 33.5
Samples: 6
Max nTPM: 40.0
Min nTPM: 24.2
P10809_1007
35.0
P10809_1022
38.9
P10809_1041
40.0
P10809_1060
24.2
P10809_1077
28.7
P10809_1098
34.4
MAIT T-cell nTPM: 33.6
Samples: 6
Max nTPM: 41.1
Min nTPM: 28.6
P10809_1006
39.8
P10809_1024
31.9
P10809_1043
41.1
P10809_1062
30.2
P10809_1083
29.9
P10809_1097
28.6
Memory CD4 T-cell nTPM: 35.4
Samples: 6
Max nTPM: 52.7
Min nTPM: 21.9
P10809_1014
37.8
P10809_1026
35.6
P10809_1045
52.7
P10809_1064
39.2
P10809_1086
24.9
P10809_1113
21.9
Memory CD8 T-cell nTPM: 43.8
Samples: 5
Max nTPM: 67.1
Min nTPM: 28.1
P10809_1012
40.8
P10809_1027
28.1
P10809_1046
67.1
P10809_1065
42.2
P10809_1111
40.7
Naive CD4 T-cell nTPM: 37.7
Samples: 6
Max nTPM: 71.4
Min nTPM: 27.5
P10809_1015
27.5
P10809_1030
29.7
P10809_1049
71.4
P10809_1068
37.7
P10809_1085
28.2
P10809_1112
31.5
Naive CD8 T-cell nTPM: 37.2
Samples: 6
Max nTPM: 48.9
Min nTPM: 23.0
P10809_1016
36.5
P10809_1031
36.7
P10809_1050
36.5
P10809_1069
48.9
P10809_1087
23.0
P10809_1110
41.5
T-reg nTPM: 42.6
Samples: 6
Max nTPM: 59.4
Min nTPM: 24.5
P10809_1018
24.5
P10809_1037
59.3
P10809_1056
59.4
P10809_1075
38.0
P10809_1094
35.9
P10809_1106
38.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 71.0
Samples: 4
Max nTPM: 85.2
Min nTPM: 54.6
RHH5202_R3573
54.6
RHH5230_R3602
74.9
RHH5259_R3631
85.2
RHH5288_R3660
69.1
Effector memory CD8 T-cell nTPM: 83.9
Samples: 4
Max nTPM: 102.5
Min nTPM: 52.4
RHH5203_R3574
99.3
RHH5231_R3603
102.5
RHH5260_R3632
81.2
RHH5289_R3661
52.4
MAIT T-cell nTPM: 82.4
Samples: 4
Max nTPM: 109.6
Min nTPM: 63.7
RHH5233_R3605
76.6
RHH5205_R3576
79.6
RHH5262_R3634
109.6
RHH5297_R3663
63.7
Memory CD4 T-cell TFH nTPM: 69.7
Samples: 4
Max nTPM: 117.0
Min nTPM: 45.2
RHH5300_R3666
65.9
RHH5236_R3608
117.0
RHH5265_R3637
50.8
RHH5208_R3579
45.2
Memory CD4 T-cell Th1 nTPM: 71.4
Samples: 4
Max nTPM: 90.9
Min nTPM: 51.3
RHH5210_R3581
62.3
RHH5302_R3668
51.3
RHH5238_R3610
90.9
RHH5267_R3639
81.1
Memory CD4 T-cell Th1/Th17 nTPM: 64.4
Samples: 4
Max nTPM: 76.5
Min nTPM: 48.0
RHH5303_R3669
48.0
RHH5211_R3582
73.8
RHH5239_R3611
59.1
RHH5268_R3640
76.5
Memory CD4 T-cell Th17 nTPM: 76.2
Samples: 4
Max nTPM: 99.0
Min nTPM: 56.2
RHH5304_R3670
58.1
RHH5212_R3583
91.3
RHH5240_R3612
56.2
RHH5269_R3641
99.0
Memory CD4 T-cell Th2 nTPM: 76.5
Samples: 4
Max nTPM: 103.9
Min nTPM: 51.7
RHH5305_R3671
68.3
RHH5213_R3584
103.9
RHH5241_R3613
51.7
RHH5270_R3642
82.2
Naive CD4 T-cell nTPM: 88.9
Samples: 4
Max nTPM: 110.6
Min nTPM: 69.2
RHH5306_R3672
79.6
RHH5214_R3585
110.6
RHH5242_R3614
96.0
RHH5271_R3643
69.2
Naive CD8 T-cell nTPM: 68.9
Samples: 4
Max nTPM: 84.2
Min nTPM: 44.0
RHH5201_R3572
44.0
RHH5229_R3601
75.3
RHH5258_R3630
72.0
RHH5287_R3659
84.2
Non-Vd2 gdTCR nTPM: 66.7
Samples: 4
Max nTPM: 76.7
Min nTPM: 54.5
RHH5235_R3607
76.7
RHH5264_R3636
72.4
RHH5207_R3578
54.5
RHH5299_R3665
63.3
T-reg nTPM: 78.7
Samples: 4
Max nTPM: 99.9
Min nTPM: 59.9
RHH5301_R3667
61.0
RHH5237_R3609
99.9
RHH5266_R3638
59.9
RHH5209_R3580
94.1
Terminal effector memory CD4 T-cell nTPM: 74.4
Samples: 2
Max nTPM: 94.6
Min nTPM: 54.1
RHH5243_R3615
94.6
RHH5272_R3644
54.1
Terminal effector memory CD8 T-cell nTPM: 73.6
Samples: 4
Max nTPM: 104.4
Min nTPM: 50.4
RHH5232_R3604
69.2
RHH5204_R3575
70.2
RHH5261_R3633
104.4
RHH5296_R3662
50.4
Vd2 gdTCR nTPM: 73.7
Samples: 4
Max nTPM: 83.3
Min nTPM: 65.9
RHH5234_R3606
71.1
RHH5206_R3577
74.4
RHH5263_R3635
83.3
RHH5298_R3664
65.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
