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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
115.1
nTPM
Monaco:
200.6
nTPM
Schmiedel:
203.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.1
HPA sample
nTPM
gdT-cell nTPM: 18.9
Samples: 6
Max nTPM: 26.9
Min nTPM: 12.3
P10809_1007
18.8
P10809_1022
21.4
P10809_1041
16.2
P10809_1060
12.3
P10809_1077
18.0
P10809_1098
26.9
MAIT T-cell nTPM: 26.6
Samples: 6
Max nTPM: 39.4
Min nTPM: 15.8
P10809_1006
28.5
P10809_1024
19.4
P10809_1043
27.0
P10809_1062
15.8
P10809_1083
29.7
P10809_1097
39.4
Memory CD4 T-cell nTPM: 79.3
Samples: 6
Max nTPM: 104.3
Min nTPM: 46.0
P10809_1014
97.6
P10809_1026
91.0
P10809_1045
104.3
P10809_1064
80.1
P10809_1086
56.7
P10809_1113
46.0
Memory CD8 T-cell nTPM: 56.5
Samples: 5
Max nTPM: 85.3
Min nTPM: 39.0
P10809_1012
63.4
P10809_1027
45.5
P10809_1046
49.3
P10809_1065
39.0
P10809_1111
85.3
Naive CD4 T-cell nTPM: 115.1
Samples: 6
Max nTPM: 166.4
Min nTPM: 87.8
P10809_1015
106.7
P10809_1030
126.5
P10809_1049
166.4
P10809_1068
96.7
P10809_1085
106.5
P10809_1112
87.8
Naive CD8 T-cell nTPM: 66.4
Samples: 6
Max nTPM: 89.8
Min nTPM: 19.2
P10809_1016
70.6
P10809_1031
85.2
P10809_1050
70.5
P10809_1069
62.8
P10809_1087
19.2
P10809_1110
89.8
T-reg nTPM: 75.1
Samples: 6
Max nTPM: 112.9
Min nTPM: 30.4
P10809_1018
45.2
P10809_1037
101.3
P10809_1056
112.9
P10809_1075
83.6
P10809_1094
30.4
P10809_1106
77.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
200.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 135.1
Samples: 4
Max nTPM: 163.4
Min nTPM: 97.4
RHH5202_R3573
97.4
RHH5230_R3602
148.0
RHH5259_R3631
131.7
RHH5288_R3660
163.4
Effector memory CD8 T-cell nTPM: 95.3
Samples: 4
Max nTPM: 129.5
Min nTPM: 42.0
RHH5203_R3574
99.6
RHH5231_R3603
129.5
RHH5260_R3632
110.1
RHH5289_R3661
42.0
MAIT T-cell nTPM: 52.5
Samples: 4
Max nTPM: 70.3
Min nTPM: 44.0
RHH5233_R3605
45.7
RHH5205_R3576
44.0
RHH5262_R3634
70.3
RHH5297_R3663
49.9
Memory CD4 T-cell TFH nTPM: 200.6
Samples: 4
Max nTPM: 316.7
Min nTPM: 91.1
RHH5300_R3666
212.8
RHH5236_R3608
316.7
RHH5265_R3637
181.7
RHH5208_R3579
91.1
Memory CD4 T-cell Th1 nTPM: 147.9
Samples: 4
Max nTPM: 173.7
Min nTPM: 121.6
RHH5210_R3581
130.8
RHH5302_R3668
173.7
RHH5238_R3610
121.6
RHH5267_R3639
165.5
Memory CD4 T-cell Th1/Th17 nTPM: 125.0
Samples: 4
Max nTPM: 180.3
Min nTPM: 86.3
RHH5303_R3669
86.3
RHH5211_R3582
180.3
RHH5239_R3611
110.1
RHH5268_R3640
123.1
Memory CD4 T-cell Th17 nTPM: 115.1
Samples: 4
Max nTPM: 171.2
Min nTPM: 73.0
RHH5304_R3670
73.0
RHH5212_R3583
171.2
RHH5240_R3612
93.8
RHH5269_R3641
122.5
Memory CD4 T-cell Th2 nTPM: 160.3
Samples: 4
Max nTPM: 200.0
Min nTPM: 132.0
RHH5305_R3671
165.7
RHH5213_R3584
143.5
RHH5241_R3613
132.0
RHH5270_R3642
200.0
Naive CD4 T-cell nTPM: 190.0
Samples: 4
Max nTPM: 238.3
Min nTPM: 141.8
RHH5306_R3672
238.3
RHH5214_R3585
216.5
RHH5242_R3614
141.8
RHH5271_R3643
163.2
Naive CD8 T-cell nTPM: 116.9
Samples: 4
Max nTPM: 186.9
Min nTPM: 60.4
RHH5201_R3572
60.4
RHH5229_R3601
102.4
RHH5258_R3630
117.7
RHH5287_R3659
186.9
Non-Vd2 gdTCR nTPM: 58.6
Samples: 4
Max nTPM: 90.9
Min nTPM: 24.0
RHH5235_R3607
90.9
RHH5264_R3636
56.4
RHH5207_R3578
24.0
RHH5299_R3665
63.2
T-reg nTPM: 158.8
Samples: 4
Max nTPM: 197.7
Min nTPM: 131.6
RHH5301_R3667
160.2
RHH5237_R3609
197.7
RHH5266_R3638
131.6
RHH5209_R3580
145.5
Terminal effector memory CD4 T-cell nTPM: 83.4
Samples: 2
Max nTPM: 94.0
Min nTPM: 72.7
RHH5243_R3615
72.7
RHH5272_R3644
94.0
Terminal effector memory CD8 T-cell nTPM: 66.8
Samples: 4
Max nTPM: 91.8
Min nTPM: 36.6
RHH5232_R3604
91.8
RHH5204_R3575
76.5
RHH5261_R3633
62.1
RHH5296_R3662
36.6
Vd2 gdTCR nTPM: 95.1
Samples: 4
Max nTPM: 105.5
Min nTPM: 71.6
RHH5234_R3606
104.2
RHH5206_R3577
71.6
RHH5263_R3635
105.5
RHH5298_R3664
99.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
