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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
60.6
nTPM
Monaco:
82.5
nTPM
Schmiedel:
225.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.6
HPA sample
nTPM
gdT-cell nTPM: 36.7
Samples: 6
Max nTPM: 48.4
Min nTPM: 22.8
P10809_1007
22.8
P10809_1022
48.4
P10809_1041
37.7
P10809_1060
41.8
P10809_1077
33.7
P10809_1098
35.8
MAIT T-cell nTPM: 31.9
Samples: 6
Max nTPM: 36.5
Min nTPM: 25.5
P10809_1006
25.5
P10809_1024
35.2
P10809_1043
36.5
P10809_1062
31.4
P10809_1083
35.8
P10809_1097
27.2
Memory CD4 T-cell nTPM: 42.7
Samples: 6
Max nTPM: 62.8
Min nTPM: 34.1
P10809_1014
35.0
P10809_1026
38.0
P10809_1045
62.8
P10809_1064
42.8
P10809_1086
34.1
P10809_1113
43.6
Memory CD8 T-cell nTPM: 41.3
Samples: 5
Max nTPM: 51.0
Min nTPM: 26.5
P10809_1012
26.5
P10809_1027
38.3
P10809_1046
49.6
P10809_1065
41.2
P10809_1111
51.0
Naive CD4 T-cell nTPM: 58.1
Samples: 6
Max nTPM: 73.8
Min nTPM: 46.9
P10809_1015
50.2
P10809_1030
62.7
P10809_1049
62.5
P10809_1068
73.8
P10809_1085
52.2
P10809_1112
46.9
Naive CD8 T-cell nTPM: 52.4
Samples: 6
Max nTPM: 67.7
Min nTPM: 34.9
P10809_1016
45.8
P10809_1031
67.7
P10809_1050
56.9
P10809_1069
60.7
P10809_1087
34.9
P10809_1110
48.2
T-reg nTPM: 60.6
Samples: 6
Max nTPM: 78.2
Min nTPM: 44.8
P10809_1018
44.8
P10809_1037
48.6
P10809_1056
62.4
P10809_1075
57.1
P10809_1094
72.5
P10809_1106
78.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 68.7
Samples: 4
Max nTPM: 77.6
Min nTPM: 59.7
RHH5202_R3573
63.1
RHH5230_R3602
74.3
RHH5259_R3631
77.6
RHH5288_R3660
59.7
Effector memory CD8 T-cell nTPM: 58.8
Samples: 4
Max nTPM: 80.3
Min nTPM: 45.1
RHH5203_R3574
51.2
RHH5231_R3603
45.1
RHH5260_R3632
80.3
RHH5289_R3661
58.4
MAIT T-cell nTPM: 35.6
Samples: 4
Max nTPM: 51.3
Min nTPM: 28.5
RHH5233_R3605
32.2
RHH5205_R3576
51.3
RHH5262_R3634
28.5
RHH5297_R3663
30.2
Memory CD4 T-cell TFH nTPM: 66.2
Samples: 4
Max nTPM: 95.4
Min nTPM: 45.7
RHH5300_R3666
45.7
RHH5236_R3608
95.4
RHH5265_R3637
66.3
RHH5208_R3579
57.4
Memory CD4 T-cell Th1 nTPM: 59.4
Samples: 4
Max nTPM: 84.2
Min nTPM: 35.8
RHH5210_R3581
47.2
RHH5302_R3668
70.2
RHH5238_R3610
35.8
RHH5267_R3639
84.2
Memory CD4 T-cell Th1/Th17 nTPM: 57.1
Samples: 4
Max nTPM: 62.2
Min nTPM: 45.3
RHH5303_R3669
60.6
RHH5211_R3582
45.3
RHH5239_R3611
60.2
RHH5268_R3640
62.2
Memory CD4 T-cell Th17 nTPM: 65.4
Samples: 4
Max nTPM: 82.6
Min nTPM: 55.7
RHH5304_R3670
59.4
RHH5212_R3583
63.7
RHH5240_R3612
82.6
RHH5269_R3641
55.7
Memory CD4 T-cell Th2 nTPM: 55.6
Samples: 4
Max nTPM: 76.4
Min nTPM: 41.9
RHH5305_R3671
50.1
RHH5213_R3584
53.8
RHH5241_R3613
41.9
RHH5270_R3642
76.4
Naive CD4 T-cell nTPM: 78.7
Samples: 4
Max nTPM: 109.5
Min nTPM: 61.0
RHH5306_R3672
61.0
RHH5214_R3585
70.2
RHH5242_R3614
74.1
RHH5271_R3643
109.5
Naive CD8 T-cell nTPM: 82.5
Samples: 4
Max nTPM: 102.7
Min nTPM: 58.5
RHH5201_R3572
78.4
RHH5229_R3601
58.5
RHH5258_R3630
90.3
RHH5287_R3659
102.7
Non-Vd2 gdTCR nTPM: 52.8
Samples: 4
Max nTPM: 76.8
Min nTPM: 38.1
RHH5235_R3607
38.1
RHH5264_R3636
76.8
RHH5207_R3578
54.1
RHH5299_R3665
42.2
T-reg nTPM: 72.6
Samples: 4
Max nTPM: 93.8
Min nTPM: 61.8
RHH5301_R3667
61.8
RHH5237_R3609
67.2
RHH5266_R3638
93.8
RHH5209_R3580
67.5
Terminal effector memory CD4 T-cell nTPM: 59.6
Samples: 2
Max nTPM: 68.3
Min nTPM: 50.9
RHH5243_R3615
50.9
RHH5272_R3644
68.3
Terminal effector memory CD8 T-cell nTPM: 48.1
Samples: 4
Max nTPM: 63.7
Min nTPM: 31.7
RHH5232_R3604
49.1
RHH5204_R3575
31.7
RHH5261_R3633
63.7
RHH5296_R3662
47.9
Vd2 gdTCR nTPM: 43.3
Samples: 4
Max nTPM: 62.7
Min nTPM: 35.4
RHH5234_R3606
37.4
RHH5206_R3577
37.8
RHH5263_R3635
62.7
RHH5298_R3664
35.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
