We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.0
nTPM
Monaco:
48.4
nTPM
Schmiedel:
49.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.0
HPA sample
nTPM
gdT-cell nTPM: 22.2
Samples: 6
Max nTPM: 27.3
Min nTPM: 12.3
P10809_1007
12.3
P10809_1022
27.3
P10809_1041
26.2
P10809_1060
25.6
P10809_1077
23.8
P10809_1098
17.8
MAIT T-cell nTPM: 15.3
Samples: 6
Max nTPM: 29.7
Min nTPM: 9.2
P10809_1006
18.4
P10809_1024
29.7
P10809_1043
10.6
P10809_1062
12.8
P10809_1083
9.2
P10809_1097
11.1
Memory CD4 T-cell nTPM: 17.4
Samples: 6
Max nTPM: 22.6
Min nTPM: 14.8
P10809_1014
16.5
P10809_1026
15.5
P10809_1045
18.8
P10809_1064
14.8
P10809_1086
22.6
P10809_1113
16.1
Memory CD8 T-cell nTPM: 26.0
Samples: 5
Max nTPM: 43.1
Min nTPM: 17.5
P10809_1012
20.1
P10809_1027
43.1
P10809_1046
24.7
P10809_1065
17.5
P10809_1111
24.5
Naive CD4 T-cell nTPM: 12.9
Samples: 6
Max nTPM: 14.7
Min nTPM: 8.7
P10809_1015
12.7
P10809_1030
8.7
P10809_1049
14.1
P10809_1068
13.7
P10809_1085
14.7
P10809_1112
13.3
Naive CD8 T-cell nTPM: 23.6
Samples: 6
Max nTPM: 36.2
Min nTPM: 14.4
P10809_1016
14.4
P10809_1031
36.2
P10809_1050
18.9
P10809_1069
26.8
P10809_1087
25.1
P10809_1110
20.2
T-reg nTPM: 19.0
Samples: 6
Max nTPM: 29.3
Min nTPM: 9.2
P10809_1018
16.7
P10809_1037
29.3
P10809_1056
13.5
P10809_1075
23.7
P10809_1094
21.4
P10809_1106
9.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 27.3
Samples: 4
Max nTPM: 31.5
Min nTPM: 23.6
RHH5202_R3573
24.9
RHH5230_R3602
29.1
RHH5259_R3631
31.5
RHH5288_R3660
23.6
Effector memory CD8 T-cell nTPM: 47.4
Samples: 4
Max nTPM: 73.7
Min nTPM: 32.1
RHH5203_R3574
73.7
RHH5231_R3603
41.9
RHH5260_R3632
32.1
RHH5289_R3661
41.9
MAIT T-cell nTPM: 21.5
Samples: 4
Max nTPM: 31.9
Min nTPM: 11.1
RHH5233_R3605
29.7
RHH5205_R3576
31.9
RHH5262_R3634
13.1
RHH5297_R3663
11.1
Memory CD4 T-cell TFH nTPM: 31.1
Samples: 4
Max nTPM: 38.3
Min nTPM: 22.1
RHH5300_R3666
22.1
RHH5236_R3608
33.3
RHH5265_R3637
30.6
RHH5208_R3579
38.3
Memory CD4 T-cell Th1 nTPM: 29.4
Samples: 4
Max nTPM: 36.9
Min nTPM: 16.1
RHH5210_R3581
30.8
RHH5302_R3668
16.1
RHH5238_R3610
33.9
RHH5267_R3639
36.9
Memory CD4 T-cell Th1/Th17 nTPM: 30.7
Samples: 4
Max nTPM: 50.5
Min nTPM: 16.0
RHH5303_R3669
26.5
RHH5211_R3582
50.5
RHH5239_R3611
16.0
RHH5268_R3640
29.7
Memory CD4 T-cell Th17 nTPM: 21.4
Samples: 4
Max nTPM: 25.3
Min nTPM: 18.4
RHH5304_R3670
18.4
RHH5212_R3583
25.3
RHH5240_R3612
22.4
RHH5269_R3641
19.6
Memory CD4 T-cell Th2 nTPM: 23.1
Samples: 4
Max nTPM: 32.9
Min nTPM: 13.5
RHH5305_R3671
13.5
RHH5213_R3584
32.9
RHH5241_R3613
22.4
RHH5270_R3642
23.6
Naive CD4 T-cell nTPM: 16.3
Samples: 4
Max nTPM: 25.1
Min nTPM: 3.7
RHH5306_R3672
15.8
RHH5214_R3585
25.1
RHH5242_R3614
3.7
RHH5271_R3643
20.6
Naive CD8 T-cell nTPM: 21.2
Samples: 4
Max nTPM: 28.1
Min nTPM: 15.9
RHH5201_R3572
20.9
RHH5229_R3601
15.9
RHH5258_R3630
19.9
RHH5287_R3659
28.1
Non-Vd2 gdTCR nTPM: 48.4
Samples: 4
Max nTPM: 58.0
Min nTPM: 43.2
RHH5235_R3607
45.8
RHH5264_R3636
46.5
RHH5207_R3578
58.0
RHH5299_R3665
43.2
T-reg nTPM: 26.4
Samples: 4
Max nTPM: 30.7
Min nTPM: 21.4
RHH5301_R3667
21.4
RHH5237_R3609
28.4
RHH5266_R3638
30.7
RHH5209_R3580
25.2
Terminal effector memory CD4 T-cell nTPM: 31.8
Samples: 2
Max nTPM: 33.7
Min nTPM: 29.8
RHH5243_R3615
33.7
RHH5272_R3644
29.8
Terminal effector memory CD8 T-cell nTPM: 36.1
Samples: 4
Max nTPM: 45.5
Min nTPM: 19.2
RHH5232_R3604
45.5
RHH5204_R3575
34.3
RHH5261_R3633
45.4
RHH5296_R3662
19.2
Vd2 gdTCR nTPM: 28.9
Samples: 4
Max nTPM: 40.0
Min nTPM: 16.8
RHH5234_R3606
37.8
RHH5206_R3577
20.9
RHH5263_R3635
40.0
RHH5298_R3664
16.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
