We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.6
nTPM
Monaco:
120.3
nTPM
Schmiedel:
67.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.6
HPA sample
nTPM
gdT-cell nTPM: 41.8
Samples: 6
Max nTPM: 59.5
Min nTPM: 24.7
P10809_1007
24.7
P10809_1022
59.5
P10809_1041
57.2
P10809_1060
41.3
P10809_1077
36.0
P10809_1098
32.1
MAIT T-cell nTPM: 43.5
Samples: 6
Max nTPM: 55.4
Min nTPM: 28.6
P10809_1006
28.6
P10809_1024
55.4
P10809_1043
54.4
P10809_1062
48.1
P10809_1083
36.6
P10809_1097
38.0
Memory CD4 T-cell nTPM: 39.3
Samples: 6
Max nTPM: 47.7
Min nTPM: 30.0
P10809_1014
30.0
P10809_1026
44.9
P10809_1045
47.7
P10809_1064
37.9
P10809_1086
36.1
P10809_1113
39.3
Memory CD8 T-cell nTPM: 40.8
Samples: 5
Max nTPM: 54.7
Min nTPM: 30.8
P10809_1012
35.3
P10809_1027
43.9
P10809_1046
54.7
P10809_1065
30.8
P10809_1111
39.4
Naive CD4 T-cell nTPM: 40.0
Samples: 6
Max nTPM: 50.7
Min nTPM: 30.5
P10809_1015
30.5
P10809_1030
37.7
P10809_1049
50.7
P10809_1068
49.4
P10809_1085
33.0
P10809_1112
38.6
Naive CD8 T-cell nTPM: 36.4
Samples: 6
Max nTPM: 45.4
Min nTPM: 28.9
P10809_1016
28.9
P10809_1031
29.7
P10809_1050
36.8
P10809_1069
44.2
P10809_1087
33.6
P10809_1110
45.4
T-reg nTPM: 53.6
Samples: 6
Max nTPM: 68.5
Min nTPM: 36.3
P10809_1018
41.6
P10809_1037
61.2
P10809_1056
68.5
P10809_1075
62.5
P10809_1094
51.7
P10809_1106
36.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 96.3
Samples: 4
Max nTPM: 125.6
Min nTPM: 68.2
RHH5202_R3573
95.7
RHH5230_R3602
68.2
RHH5259_R3631
95.8
RHH5288_R3660
125.6
Effector memory CD8 T-cell nTPM: 116.6
Samples: 4
Max nTPM: 143.1
Min nTPM: 99.1
RHH5203_R3574
111.1
RHH5231_R3603
99.1
RHH5260_R3632
113.2
RHH5289_R3661
143.1
MAIT T-cell nTPM: 81.7
Samples: 4
Max nTPM: 97.8
Min nTPM: 69.1
RHH5233_R3605
97.8
RHH5205_R3576
80.0
RHH5262_R3634
80.0
RHH5297_R3663
69.1
Memory CD4 T-cell TFH nTPM: 93.7
Samples: 4
Max nTPM: 123.4
Min nTPM: 64.4
RHH5300_R3666
123.4
RHH5236_R3608
79.5
RHH5265_R3637
107.6
RHH5208_R3579
64.4
Memory CD4 T-cell Th1 nTPM: 97.9
Samples: 4
Max nTPM: 104.1
Min nTPM: 94.2
RHH5210_R3581
104.1
RHH5302_R3668
97.7
RHH5238_R3610
95.6
RHH5267_R3639
94.2
Memory CD4 T-cell Th1/Th17 nTPM: 106.3
Samples: 4
Max nTPM: 147.3
Min nTPM: 69.7
RHH5303_R3669
124.9
RHH5211_R3582
69.7
RHH5239_R3611
147.3
RHH5268_R3640
83.1
Memory CD4 T-cell Th17 nTPM: 112.9
Samples: 4
Max nTPM: 169.3
Min nTPM: 63.6
RHH5304_R3670
102.2
RHH5212_R3583
63.6
RHH5240_R3612
169.3
RHH5269_R3641
116.4
Memory CD4 T-cell Th2 nTPM: 94.0
Samples: 4
Max nTPM: 106.9
Min nTPM: 72.8
RHH5305_R3671
99.1
RHH5213_R3584
97.1
RHH5241_R3613
106.9
RHH5270_R3642
72.8
Naive CD4 T-cell nTPM: 87.3
Samples: 4
Max nTPM: 103.9
Min nTPM: 68.6
RHH5306_R3672
103.9
RHH5214_R3585
75.4
RHH5242_R3614
68.6
RHH5271_R3643
101.1
Naive CD8 T-cell nTPM: 91.1
Samples: 4
Max nTPM: 104.5
Min nTPM: 74.4
RHH5201_R3572
87.2
RHH5229_R3601
104.5
RHH5258_R3630
74.4
RHH5287_R3659
98.4
Non-Vd2 gdTCR nTPM: 104.4
Samples: 4
Max nTPM: 127.6
Min nTPM: 89.9
RHH5235_R3607
110.3
RHH5264_R3636
89.9
RHH5207_R3578
89.9
RHH5299_R3665
127.6
T-reg nTPM: 95.9
Samples: 4
Max nTPM: 115.5
Min nTPM: 83.8
RHH5301_R3667
97.6
RHH5237_R3609
115.5
RHH5266_R3638
86.6
RHH5209_R3580
83.8
Terminal effector memory CD4 T-cell nTPM: 120.3
Samples: 2
Max nTPM: 120.7
Min nTPM: 119.9
RHH5243_R3615
120.7
RHH5272_R3644
119.9
Terminal effector memory CD8 T-cell nTPM: 111.6
Samples: 4
Max nTPM: 149.7
Min nTPM: 80.0
RHH5232_R3604
100.3
RHH5204_R3575
80.0
RHH5261_R3633
116.3
RHH5296_R3662
149.7
Vd2 gdTCR nTPM: 89.6
Samples: 4
Max nTPM: 103.1
Min nTPM: 76.6
RHH5234_R3606
76.6
RHH5206_R3577
92.5
RHH5263_R3635
103.1
RHH5298_R3664
86.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
