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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:264.6 nTPM
GTEx:264.6 nTPM
FANTOM5:126.3 Scaled Tags Per Million
Pig:192.2 nTPM
Mouse:615.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 264.6
Samples: 105

Max nTPM: 575.4
Min nTPM: 116.7
Std nTPM: 71.0
Median nTPM:
490_1 67 years, female 575.4
415_1 77 years, female 441.1
495_1 57 years, female 399.7
117_1 61 years, male 397.1
217_1 76 years, male 391.3
237_1 82 years, male 383.7
347_1 72 years, male 383.7
491_1 89 years, female 371.0
32_1 67 years, male 370.1
526_1 61 years, male 365.8
35_1 74 years, female 362.5
307_1 66 years, female 356.1
218_1 71 years, female 354.3
466_1 57 years, female 338.7
405_1 91 years, male 337.5
414_1 84 years, female 335.8
81_1 67 years, male 321.5
311_1 78 years, male 321.1
468_1 89 years, male 319.0
149_1 88 years, male 313.2
335_1 73 years, female 310.6
229_1 69 years, female 309.6
350_1 84 years, female 309.2
324_1 76 years, male 307.3
389_1 86 years, female 306.6
6_1 73 years, female 304.9
162_1 79 years, female 302.3
246_1 77 years, male 296.9
189_1 76 years, male 296.5
447_1 81 years, male 293.5
153_1 70 years, female 291.5
313_1 79 years, female 290.9
43_1 64 years, female 289.6
375_1 74 years, female 288.5
265_1 87 years, male 288.4
172_1 72 years, female 287.6
126_1 63 years, male 287.1
425_1 59 years, female 286.2
518_1 75 years, female 286.0
9_1 66 years, female 281.6
348_1 84 years, male 277.8
355_1 70 years, female 277.6
413_1 59 years, female 273.5
145_1 84 years, male 272.1
377_1 82 years, female 268.6
142_1 61 years, female 268.4
251_1 78 years, male 268.2
18_1 88 years, male 267.9
115_1 83 years, male 261.2
315_1 62 years, female 258.7
386_1 76 years, male 255.9
139_1 64 years, female 255.8
119_1 70 years, female 255.0
480_1 63 years, male 255.0
163_1 78 years, male 254.8
499_1 55 years, female 254.1
42_1 85 years, male 251.3
293_1 68 years, female 250.7
384_1 83 years, male 249.2
266_1 85 years, male 248.7
89_1 63 years, male 246.2
318_1 68 years, male 246.2
243_1 75 years, male 245.1
319_1 81 years, male 243.8
137_1 83 years, male 243.1
321_1 62 years, female 243.1
352_1 62 years, male 242.6
308_1 70 years, female 241.9
2_1 77 years, female 240.8
254_1 77 years, female 237.5
291_1 76 years, male 237.0
286_1 68 years, female 235.6
322_1 76 years, male 232.5
99_1 64 years, male 228.1
316_1 62 years, male 226.4
376_1 75 years, female 225.0
503_1 68 years, male 223.5
173_1 67 years, male 219.1
396_1 62 years, male 216.9
406_1 79 years, male 214.9
177_1 74 years, male 208.8
404_1 82 years, female 208.4
320_1 89 years, female 208.1
292_1 71 years, male 205.5
379_1 60 years, male 203.1
349_1 83 years, male 198.6
317_1 60 years, male 194.7
109_1 81 years, female 194.3
356_1 87 years, female 192.5
354_1 81 years, female 192.2
517_1 88 years, male 190.3
120_1 70 years, female 188.2
17_1 71 years, male 187.0
41_1 94 years, female 184.8
351_1 91 years, male 182.3
314_1 67 years, male 177.9
4_1 88 years, female 176.2
394_1 75 years, female 174.0
353_1 82 years, female 173.1
288_1 66 years, female 172.3
501_1 88 years, male 165.4
264_1 73 years, female 161.7
452_1 88 years, female 129.1
506_1 65 years, male 126.5
295_1 61 years, female 116.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

126.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 126.3
FF:10030-101E3 24-65 years, mixed 126.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.2
Pig sample Sample description nTPM
Retina
nTPM: 192.2
Samples: 4

Max nTPM: 213.8
Min nTPM: 161.4
Sample A Female 210.1
Sample B Female 161.4
Sample C Male 213.8
Sample D Male 183.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

615.2
Mouse sample Sample description nTPM
Retina
nTPM: 615.2
Samples: 4

Max nTPM: 752.9
Min nTPM: 500.3
Sample A Male 500.3
Sample B Male 619.0
Sample C Female 752.9
Sample D Female 588.4

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