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CSDE1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CSDE1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:89.8 nTPM
FANTOM5:321.8 Scaled Tags Per Million
Pig:151.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018846Antibody HPA052221
Glial cells LowNot detected
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 89.8
Samples: 300

Max nTPM: 217.1
Min nTPM: 27.6
Std nTPM: 22.0
Median nTPM: 87.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 217.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 183.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 158.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 149.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 146.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 136.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 134.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 132.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 131.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 131.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 131.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 128.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 127.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 127.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 125.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 124.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 124.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 123.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 123.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 120.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 120.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 120.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 119.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 118.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 117.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 117.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 117.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 117.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 116.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 116.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 116.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 115.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 115.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 115.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 115.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 115.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 114.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 114.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 114.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 112.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 112.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 111.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 111.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 111.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 111.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 111.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 111.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 110.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 109.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 109.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 108.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 108.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 107.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 107.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 107.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 106.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 106.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 106.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 105.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 105.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 105.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 104.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 104.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 103.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 103.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 103.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 103.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 102.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 102.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 101.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 101.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 100.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 100.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 100.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 100.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 99.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 99.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 99.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 99.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 99.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 99.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 98.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 98.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 98.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 98.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 98.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 98.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 98.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 97.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 97.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 97.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 97.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 97.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 97.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 97.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 96.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 96.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 96.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 96.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 96.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 96.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 96.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 96.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 96.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 95.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 95.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 95.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 95.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 95.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 94.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 94.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 94.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 94.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 94.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 94.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 94.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 93.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 93.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 93.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 93.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 92.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 92.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 92.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 91.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 91.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 91.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 91.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 91.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 90.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 90.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 90.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 90.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 90.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 89.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 89.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 89.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 89.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 89.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 89.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 89.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 89.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 89.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 88.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 88.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 88.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 88.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 88.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 88.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 87.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 87.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 87.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 87.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 87.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 87.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 87.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 87.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 87.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 86.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 86.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 86.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 86.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 86.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 86.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 86.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 86.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 86.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 86.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 85.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 85.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 85.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 85.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 85.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 85.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 84.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 84.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 84.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 84.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 84.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 83.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 83.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 83.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 83.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 83.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 82.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 82.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 82.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 82.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 82.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 81.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 81.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 81.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 81.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 81.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 81.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 81.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 81.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 81.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 81.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 81.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 80.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 80.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 80.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 80.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 80.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 80.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 79.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 79.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 79.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 79.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 79.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 79.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 79.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 78.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 78.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 78.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 78.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 78.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 77.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 77.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 77.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 77.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 77.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 76.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 76.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 76.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 76.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 76.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 76.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 76.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 75.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 75.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 75.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 75.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 74.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 74.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 74.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 73.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 73.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 73.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 73.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 72.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 72.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 72.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 72.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 72.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 71.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 71.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 71.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 71.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 71.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 71.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 70.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 70.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 69.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 69.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 69.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 68.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 68.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 67.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 66.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 66.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 65.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 65.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 65.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 65.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 65.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 64.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 64.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 64.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 64.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 63.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 63.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 62.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 61.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 61.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 61.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 61.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 61.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 59.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 59.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 58.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 58.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 57.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 57.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 57.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 55.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 55.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 55.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 54.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 54.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 53.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 52.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 47.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 46.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 38.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 33.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 33.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 27.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

321.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 321.8
FF:10164-103B2 76 years, female 321.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.9
Pig sample Sample description nTPM
Caudate
nTPM: 151.9
Samples: 4

Max nTPM: 158.7
Min nTPM: 144.1
Sample A Female 158.7
Sample B Female 144.1
Sample C Male 157.3
Sample D Male 147.3

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