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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

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  • IDS
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:159.5 nTPM
FANTOM5:851.4 Scaled Tags Per Million
Pig:138.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA078003
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 159.5
Samples: 300

Max nTPM: 455.3
Min nTPM: 43.8
Std nTPM: 77.5
Median nTPM: 143.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 455.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 398.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 388.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 363.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 360.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 350.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 350.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 341.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 340.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 339.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 335.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 334.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 333.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 330.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 329.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 324.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 323.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 320.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 313.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 308.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 297.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 295.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 293.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 287.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 286.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 277.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 277.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 275.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 274.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 271.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 268.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 263.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 262.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 262.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 259.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 257.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 255.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 250.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 248.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 242.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 242.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 241.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 237.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 236.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 234.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 234.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 233.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 232.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 230.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 230.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 230.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 229.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 228.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 226.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 225.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 224.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 223.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 222.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 221.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 221.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 220.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 219.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 217.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 216.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 215.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 215.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 213.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 213.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 211.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 211.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 209.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 209.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 209.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 208.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 208.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 207.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 207.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 206.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 206.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 206.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 206.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 202.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 196.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 194.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 191.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 190.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 190.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 188.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 188.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 187.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 185.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 184.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 184.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 183.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 182.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 182.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 182.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 181.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 180.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 179.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 178.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 178.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 177.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 177.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 176.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 175.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 175.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 175.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 173.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 173.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 173.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 172.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 172.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 171.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 170.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 170.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 167.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 167.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 166.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 166.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 166.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 164.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 164.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 163.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 163.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 163.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 162.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 161.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 160.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 158.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 155.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 155.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 154.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 152.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 151.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 151.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 150.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 150.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 150.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 150.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 149.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 148.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 147.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 147.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 146.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 146.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 145.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 144.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 143.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 143.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 143.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 141.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 141.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 141.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 140.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 139.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 139.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 139.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 138.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 137.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 137.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 135.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 135.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 135.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 134.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 134.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 133.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 133.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 132.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 131.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 130.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 130.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 130.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 129.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 128.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 128.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 127.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 127.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 125.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 124.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 124.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 124.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 124.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 124.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 123.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 123.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 122.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 121.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 120.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 120.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 120.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 119.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 119.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 118.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 117.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 116.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 116.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 115.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 115.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 114.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 113.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 113.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 111.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 109.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 109.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 108.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 107.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 105.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 104.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 104.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 104.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 103.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 102.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 101.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 101.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 100.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 100.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 100.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 100.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 98.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 97.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 96.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 96.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 96.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 96.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 95.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 94.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 94.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 94.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 94.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 94.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 93.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 93.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 93.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 93.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 92.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 92.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 90.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 90.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 89.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 89.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 89.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 89.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 88.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 88.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 87.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 87.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 86.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 86.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 85.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 85.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 85.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 85.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 84.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 83.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 83.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 83.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 83.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 83.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 79.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 78.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 78.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 78.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 77.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 77.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 77.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 75.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 75.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 75.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 73.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 73.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 73.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 73.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 73.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 71.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 71.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 70.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 70.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 69.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 69.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 65.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 65.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 65.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 64.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 63.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 63.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 63.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 63.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 61.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 61.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 60.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 57.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 57.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 56.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 55.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 55.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 54.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 43.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

851.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 851.4
FF:10164-103B2 76 years, female 851.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.4
Pig sample Sample description nTPM
Caudate
nTPM: 138.4
Samples: 4

Max nTPM: 154.8
Min nTPM: 115.0
Sample A Female 115.0
Sample B Female 140.1
Sample C Male 154.8
Sample D Male 143.7

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