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SLC25A39
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC25A39
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:50.3 nTPM
FANTOM5:73.1 Scaled Tags Per Million
Pig:34.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA026785
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 50.3
Samples: 300

Max nTPM: 114.8
Min nTPM: 19.2
Std nTPM: 14.2
Median nTPM: 48.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 114.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 97.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 96.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 95.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 88.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 84.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 82.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 82.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 81.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 81.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 80.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 79.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 78.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 78.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 78.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 78.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 77.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 76.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 76.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 75.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 73.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 73.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 71.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 70.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 70.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 69.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 69.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 69.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 69.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 68.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 68.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 68.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 67.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 67.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 67.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 67.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 67.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 66.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 66.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 66.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 65.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 65.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 64.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 64.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 64.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 63.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 63.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 62.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 62.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 62.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 61.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 61.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 61.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 61.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 61.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 61.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 61.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 61.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 60.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 60.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 60.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 60.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 59.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 59.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 59.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 58.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 58.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 58.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 58.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 58.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 58.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 58.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 58.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 58.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 57.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 57.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 57.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 57.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 57.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 57.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 57.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 56.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 56.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 56.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 56.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 56.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 56.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 56.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 56.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 56.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 55.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 55.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 55.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 55.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 55.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 54.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 54.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 54.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 54.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 54.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 54.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 54.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 54.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 54.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 53.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 53.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 53.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 53.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 53.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 53.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 53.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 53.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 52.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 52.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 52.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 52.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 52.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 52.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 52.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 52.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 52.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 52.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 51.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 51.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 51.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 51.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 51.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 50.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 50.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 50.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 50.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 50.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 50.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 50.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 50.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 50.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 50.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 50.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 49.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 49.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 49.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 49.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 49.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 49.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 49.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 49.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 49.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 49.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 48.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 48.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 48.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 48.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 48.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 48.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 48.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 48.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 48.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 48.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 48.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 47.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 47.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 47.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 47.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 47.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 47.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 47.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 47.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 46.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 46.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 46.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 46.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 46.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 46.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 46.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 46.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 46.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 45.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 45.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 45.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 45.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 45.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 45.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 44.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 44.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 44.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 44.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 44.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 44.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 44.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 44.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 43.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 43.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 43.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 43.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 43.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 43.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 43.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 43.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 42.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 42.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 42.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 42.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 42.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 42.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 42.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 42.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 42.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 41.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 41.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 41.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 41.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 41.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 41.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 40.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 40.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 40.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 40.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 40.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 40.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 40.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 40.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 40.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 40.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 39.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 39.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 39.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 39.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 39.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 39.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 39.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 38.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 38.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 38.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 38.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 38.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 38.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 38.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 38.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 38.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 38.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 38.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 37.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 37.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 37.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 37.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 37.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 37.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 37.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 36.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 36.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 36.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 36.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 36.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 36.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 36.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 36.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 35.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 35.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 34.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 34.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 34.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 34.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 34.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 33.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 33.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 33.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 33.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 33.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 33.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 32.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 32.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 32.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 32.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 32.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 31.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 31.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 31.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 31.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 31.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 30.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 30.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 30.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 30.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 29.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 29.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 28.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 27.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 27.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 26.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 25.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 23.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 23.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 22.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 19.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

73.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.1
FF:10164-103B2 76 years, female 73.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.0
Pig sample Sample description nTPM
Caudate
nTPM: 34.0
Samples: 4

Max nTPM: 40.5
Min nTPM: 26.5
Sample A Female 26.5
Sample B Female 39.4
Sample C Male 40.5
Sample D Male 29.5

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