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ATP1A2
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ATP1A2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:582.8 nTPM
FANTOM5:741.8 Scaled Tags Per Million
Pig:310.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB022230
Glial cells Medium
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 582.8
Samples: 300

Max nTPM: 1439.2
Min nTPM: 65.6
Std nTPM: 237.2
Median nTPM: 558.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1439.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1319.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1289.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1275.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1199.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1171.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1120.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1098.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1094.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1082.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1068.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1044.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1040.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1023.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1011.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1006.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1000.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1000.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 968.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 962.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 954.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 952.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 946.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 934.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 933.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 926.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 925.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 921.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 919.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 918.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 918.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 904.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 902.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 900.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 894.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 892.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 887.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 874.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 872.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 871.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 865.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 857.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 856.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 856.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 856.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 840.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 828.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 819.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 811.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 800.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 799.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 798.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 796.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 793.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 792.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 789.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 786.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 782.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 781.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 777.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 767.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 761.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 761.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 760.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 756.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 750.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 746.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 744.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 736.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 735.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 734.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 734.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 728.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 727.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 726.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 723.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 720.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 714.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 713.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 708.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 708.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 708.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 704.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 703.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 696.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 694.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 684.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 675.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 669.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 669.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 668.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 664.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 657.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 656.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 656.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 653.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 653.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 650.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 647.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 647.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 645.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 644.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 643.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 642.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 641.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 641.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 640.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 636.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 636.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 636.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 632.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 630.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 629.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 627.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 626.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 626.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 618.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 617.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 612.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 611.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 610.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 609.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 609.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 609.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 605.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 605.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 604.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 602.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 601.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 601.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 596.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 595.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 594.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 593.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 591.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 590.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 588.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 585.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 578.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 578.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 577.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 574.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 572.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 570.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 568.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 563.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 562.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 561.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 561.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 558.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 558.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 550.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 542.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 539.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 538.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 537.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 535.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 532.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 531.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 529.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 527.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 527.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 526.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 522.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 522.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 521.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 517.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 515.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 515.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 514.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 513.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 511.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 508.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 506.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 505.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 503.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 500.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 498.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 498.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 497.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 496.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 492.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 490.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 490.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 486.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 486.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 485.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 485.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 484.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 482.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 481.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 479.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 477.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 477.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 476.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 476.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 476.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 475.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 474.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 473.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 467.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 466.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 463.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 462.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 458.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 453.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 450.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 446.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 445.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 440.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 438.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 438.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 438.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 436.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 431.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 429.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 429.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 428.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 426.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 426.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 425.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 420.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 419.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 418.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 416.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 416.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 416.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 415.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 414.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 414.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 413.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 412.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 411.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 409.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 408.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 408.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 405.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 404.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 401.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 401.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 399.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 398.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 397.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 389.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 389.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 385.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 384.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 380.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 379.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 375.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 374.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 370.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 357.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 354.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 353.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 352.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 346.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 336.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 335.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 330.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 330.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 327.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 325.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 325.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 321.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 320.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 320.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 310.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 303.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 301.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 301.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 300.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 295.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 291.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 291.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 290.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 282.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 276.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 268.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 253.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 248.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 236.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 232.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 228.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 227.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 226.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 213.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 204.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 198.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 196.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 195.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 194.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 190.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 175.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 164.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 152.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 142.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 137.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 93.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 65.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

741.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 741.8
FF:10164-103B2 76 years, female 741.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.1
Pig sample Sample description nTPM
Caudate
nTPM: 310.1
Samples: 4

Max nTPM: 378.5
Min nTPM: 211.0
Sample A Female 211.0
Sample B Female 333.1
Sample C Male 378.5
Sample D Male 317.8

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