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GABARAPL2
HPA
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • GABARAPL2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:318.3 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:164.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA036726
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

318.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 318.3
Samples: 300

Max nTPM: 696.4
Min nTPM: 127.8
Std nTPM: 79.2
Median nTPM: 304.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 696.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 688.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 667.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 608.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 553.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 551.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 539.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 534.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 511.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 498.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 497.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 490.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 486.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 486.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 481.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 463.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 463.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 457.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 454.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 439.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 438.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 436.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 432.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 426.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 425.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 423.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 422.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 418.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 415.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 408.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 407.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 406.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 406.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 406.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 402.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 398.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 398.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 396.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 395.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 395.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 394.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 387.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 386.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 385.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 382.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 379.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 379.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 377.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 375.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 375.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 374.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 374.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 372.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 372.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 369.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 369.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 368.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 368.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 368.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 366.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 364.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 363.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 360.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 357.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 356.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 356.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 355.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 355.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 354.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 353.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 352.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 352.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 351.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 351.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 351.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 350.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 349.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 349.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 348.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 347.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 346.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 345.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 345.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 345.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 344.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 344.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 344.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 344.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 343.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 343.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 341.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 338.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 338.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 337.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 336.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 336.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 333.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 333.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 333.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 331.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 330.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 330.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 327.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 327.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 326.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 326.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 324.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 323.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 323.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 323.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 322.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 321.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 321.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 321.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 319.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 319.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 318.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 318.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 318.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 317.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 316.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 316.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 316.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 315.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 315.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 314.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 314.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 313.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 312.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 312.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 312.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 312.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 312.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 312.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 311.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 311.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 311.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 311.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 310.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 309.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 308.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 307.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 307.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 307.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 307.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 307.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 306.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 306.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 305.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 305.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 304.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 304.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 302.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 302.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 302.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 302.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 302.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 301.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 301.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 301.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 299.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 299.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 298.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 296.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 296.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 295.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 295.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 295.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 294.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 294.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 292.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 291.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 291.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 291.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 291.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 291.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 290.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 290.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 290.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 289.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 289.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 289.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 289.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 289.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 287.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 286.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 286.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 285.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 285.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 285.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 285.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 284.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 283.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 283.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 283.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 282.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 282.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 281.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 280.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 280.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 279.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 279.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 279.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 279.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 279.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 278.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 277.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 277.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 276.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 276.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 276.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 275.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 275.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 275.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 274.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 274.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 274.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 274.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 272.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 272.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 270.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 270.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 269.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 268.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 268.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 268.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 268.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 267.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 267.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 266.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 264.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 263.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 262.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 262.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 261.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 260.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 258.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 257.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 257.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 257.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 256.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 254.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 254.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 254.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 253.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 253.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 252.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 252.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 251.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 251.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 251.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 249.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 249.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 248.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 248.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 248.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 246.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 246.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 246.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 245.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 245.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 245.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 244.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 244.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 243.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 243.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 243.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 243.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 241.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 239.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 239.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 239.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 238.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 238.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 238.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 237.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 236.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 235.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 234.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 233.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 232.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 229.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 227.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 225.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 225.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 225.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 224.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 224.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 221.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 221.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 216.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 214.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 211.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 209.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 205.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 203.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 199.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 197.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 150.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 127.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 167.4
FF:10164-103B2 76 years, female 167.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.2
Pig sample Sample description nTPM
Caudate
nTPM: 164.2
Samples: 4

Max nTPM: 180.1
Min nTPM: 155.7
Sample A Female 159.2
Sample B Female 155.7
Sample C Male 180.1
Sample D Male 161.6

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