BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:125.2 nTPM
GTEx:17.9 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:55.1 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 125.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 64.6
1781 Male, age 74, unknown 85.9
2846 Female, age 79, unknown 75.8
2290 Female, age 72, unknown 67.0
2288 Male, age 75, left hemisphere 66.6
2289 Male, age 61, right hemisphere 61.0
1854 Male, age 80, left hemisphere 53.5
2481 Female, age 94, left hemisphere 53.5
1857 Female, age 85, left hemisphere 53.1
Globus pallidus, externus
nTPM: 38.5
2395 Male, age 75, both hemispheres 44.3
2646 Male, age 61, right hemisphere 38.9
1996 Male, age 80, right hemisphere 37.9
2772 Female, age 79, unknown 37.6
2567 Female, age 72, unknown 34.0
Globus pallidus, internus
nTPM: 41.7
2566 Female, age 72, unknown 51.0
2483 Female, age 94, right hemisphere 47.0
2287 Male, age 75, right hemisphere 44.4
1818 Male, age 74, unknown 39.5
2111 Female, age 85, right hemisphere 37.4
2037 Male, age 80, right hemisphere 36.3
2778 Female, age 91, both hemispheres 36.2
Nucleus accumbens
nTPM: 55.0
1783 Male, age 74, unknown 68.7
1856 Female, age 91, right hemisphere 65.0
2698 Female, age 72, unknown 60.0
2286 Male, age 75, left hemisphere 56.9
1806 Female, age 85, left hemisphere 52.6
2824 Male, age 61, right hemisphere 49.0
2391 Female, age 94, left hemisphere 48.8
2732 Male, age 80, right hemisphere 39.2
Nucleus basalis of Meynert
nTPM: 53.5
2821 Male, age 75, both hemispheres 60.9
2393 Male, age 80, right hemisphere 58.9
2484 Female, age 94, left hemisphere 55.2
2569 Male, age 61, both hemispheres 39.1
Nucleus of the diagonal band
nTPM: 125.2
2029 Male, age 61, right hemisphere 185.5
2195 Female, age 85, both hemispheres 139.6
2775 Male, age 80, right hemisphere 122.6
1812 Female, age 91, both hemispheres 110.4
1979 Male, age 74, unknown 67.9
Putamen
nTPM: 58.6
1829 Male, age 74, unknown 68.3
2489 Female, age 72, unknown 62.1
2466 Female, age 79, unknown 60.1
2647 Male, age 75, left hemisphere 59.8
2482 Female, age 94, left hemisphere 54.6
1838 Male, age 80, right hemisphere 53.7
1937 Female, age 91, right hemisphere 51.7
Septal nuclei
nTPM: 115.2
2629 Female, age 94, right hemisphere 194.6
1960 Male, age 74, unknown 148.9
2031 Female, age 72, unknown 133.9
2009 Female, age 91, both hemispheres 122.5
2059 Female, age 85, both hemispheres 80.8
2394 Male, age 61, left hemisphere 70.3
2199 Male, age 80, right hemisphere 55.4
Stria terminalis, bed nucleus
nTPM: 102.6
2486 Female, age 94, both hemispheres 126.9
1974 Female, age 91, both hemispheres 107.3
2201 Male, age 74, unknown 73.5

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 17.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.2
Samples: 300

Max nTPM: 53.8
Min nTPM: 5.6
Std nTPM: 6.6
Median nTPM: 16.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 53.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 40.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 39.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 33.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 32.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 32.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 32.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 31.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 30.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 29.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 29.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.9
Samples: 285

Max nTPM: 33.7
Min nTPM: 5.5
Std nTPM: 5.4
Median nTPM: 18.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 33.7
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 31.2
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 30.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 29.4
GTEX-1N2EF-0011-R6a-SM-F33ZJ 60-69 years, male 28.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 28.6
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 28.1
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 27.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 27.4
GTEX-11GSO-0011-R6a-SM-GJ3RC 60-69 years, male 27.2
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 26.7
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Brain - Putamen (basal ganglia)
Average nTPM: 14.7
Samples: 254

Max nTPM: 41.0
Min nTPM: 4.7
Std nTPM: 5.2
Median nTPM: 14.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 41.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 28.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 27.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 27.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 26.5
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 25.3
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 25.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 25.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 24.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 24.7
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 24.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.5
FF:10164-103B2 76 years, female 46.5
Nucleus accumbens
Scaled Tags Per Million: 143.6
FF:10037-101F1 23-56 years, mixed 143.6
Putamen
Scaled Tags Per Million: 53.8
FF:10176-103C5 60 years, female 53.8
Globus pallidus
Scaled Tags Per Million: 33.7
FF:10175-103C4 60 years, female 34.5
FF:10161-103A8 76 years, female 33.0

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 45.4
Pig sample Sample description nTPM
Caudate
nTPM: 45.4
Samples: 4

Max nTPM: 49.7
Min nTPM: 42.2
Sample A Female 47.5
Sample B Female 42.2
Sample C Male 49.7
Sample D Male 42.3
Putamen
nTPM: 43.3
Samples: 4

Max nTPM: 48.1
Min nTPM: 35.1
Sample A Female 35.1
Sample B Female 48.1
Sample C Male 43.3
Sample D Male 46.5
Septum
nTPM: 38.8
Samples: 4

Max nTPM: 40.8
Min nTPM: 37.7
Sample A Female 38.2
Sample B Female 37.7
Sample C Male 38.5
Sample D Male 40.8
Ventral pallidum
nTPM: 44.6
Samples: 4

Max nTPM: 48.4
Min nTPM: 41.9
Sample A Female 43.5
Sample B Female 48.4
Sample C Male 44.6
Sample D Male 41.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 55.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.9
Samples: 4

Max nTPM: 48.7
Min nTPM: 34.7
Sample A Male 36.0
Sample B Male 34.7
Sample C Female 48.7
Sample D Female 48.2
Septum
nTPM: 30.7
Samples: 4

Max nTPM: 38.6
Min nTPM: 23.4
Sample A Male 38.6
Sample B Male 23.4
Sample C Female 28.2
Sample D Female 32.6
Ventral forebrain
nTPM: 55.1
Samples: 4

Max nTPM: 67.2
Min nTPM: 42.5
Sample A Male 60.7
Sample B Male 50.1
Sample C Female 42.5
Sample D Female 67.2

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.7
69133668 Antisense, RP_050321_02_A06, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 2.6
69133668 Antisense, RP_050321_02_A06, Mouse strain C57BL/6J (56 days, male) 2.6

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