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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Neuronal projections: Medium
Synapses: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:71.9 nTPM
FANTOM5:149.0 Scaled Tags Per Million
Pig:75.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA007179
Glial cells Not detected
Neuronal cells Low
Neuronal projections Medium
Synapses High

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007179
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 71.9
Samples: 300

Max nTPM: 181.5
Min nTPM: 1.2
Std nTPM: 36.3
Median nTPM: 70.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 181.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 179.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 162.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 159.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 155.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 151.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 151.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 150.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 149.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 148.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 146.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 143.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 142.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 135.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 135.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 134.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 134.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 132.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 132.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 131.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 131.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 130.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 128.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 128.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 127.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 127.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 127.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 126.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 124.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 124.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 122.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 120.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 120.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 119.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 115.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 115.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 114.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 113.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 113.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 112.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 112.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 112.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 112.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 112.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 112.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 112.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 109.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 108.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 108.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 108.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 107.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 107.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 106.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 106.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 105.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 103.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 102.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 101.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 101.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 100.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 100.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 99.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 99.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 99.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 98.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 97.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 97.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 97.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 96.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 96.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 95.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 95.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 94.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 93.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 93.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 93.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 93.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 93.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 93.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 92.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 92.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 92.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 92.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 91.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 91.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 90.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 90.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 90.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 90.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 90.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 90.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 89.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 89.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 89.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 88.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 88.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 88.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 88.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 87.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 87.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 86.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 86.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 86.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 86.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 85.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 85.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 85.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 84.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 84.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 84.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 83.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 82.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 82.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 81.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 81.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 81.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 80.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 80.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 80.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 80.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 80.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 79.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 77.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 77.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 76.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 76.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 76.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 75.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 75.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 75.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 75.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 74.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 74.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 74.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 73.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 73.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 73.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 72.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 72.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 72.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 72.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 72.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 72.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 72.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 72.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 71.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 71.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 70.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 70.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 70.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 69.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 68.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 68.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 67.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 67.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 67.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 67.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 67.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 67.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 66.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 65.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 65.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 64.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 64.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 63.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 62.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 61.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 61.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 61.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 61.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 61.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 61.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 59.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 59.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 58.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 58.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 58.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 58.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 58.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 57.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 57.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 57.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 56.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 55.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 55.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 55.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 54.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 54.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 54.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 54.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 54.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 54.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 53.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 53.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 53.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 53.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 52.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 52.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 52.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 52.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 52.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 52.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 51.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 51.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 50.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 50.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 50.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 50.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 49.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 49.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 49.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 49.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 48.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 48.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 47.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 47.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 47.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 46.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 45.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 45.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 45.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 44.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 44.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 43.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 43.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 43.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 43.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 42.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 42.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 42.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 42.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 40.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 40.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 39.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 39.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 38.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 38.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 37.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 37.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 37.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 37.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 36.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 36.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 36.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 35.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 35.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 34.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 34.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 33.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 33.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 33.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 33.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 32.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 31.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 30.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 30.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 29.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 29.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 29.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 29.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 28.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 28.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 27.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 27.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 27.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 27.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 25.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 25.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 24.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 24.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 24.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 24.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 24.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 23.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 22.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 22.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 21.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 20.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 20.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 19.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 19.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 17.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 16.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 15.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 15.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 13.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 13.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 11.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 10.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 9.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 9.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 8.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 3.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 149.0
FF:10164-103B2 76 years, female 149.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.1
Pig sample Sample description nTPM
Caudate
nTPM: 75.1
Samples: 4

Max nTPM: 89.6
Min nTPM: 55.0
Sample A Female 55.0
Sample B Female 80.1
Sample C Male 89.6
Sample D Male 75.8

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