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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • CAMK2B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:97.8 nTPM
FANTOM5:168.8 Scaled Tags Per Million
Pig:301.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA026307Antibody HPA051783Antibody HPA051785Antibody HPA053973Antibody CAB006849
Glial cells Not detectedNot detectedNot detectedNot detectedNot detected
Neuronal cells HighHighMediumMediumHigh









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 97.8
Samples: 300

Max nTPM: 213.6
Min nTPM: 2.1
Std nTPM: 52.0
Median nTPM: 95.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 213.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 212.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 209.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 208.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 208.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 207.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 202.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 197.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 196.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 196.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 194.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 193.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 189.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 188.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 187.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 183.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 182.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 181.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 181.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 179.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 179.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 178.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 177.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 177.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 177.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 176.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 175.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 173.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 172.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 172.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 171.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 171.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 171.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 169.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 168.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 165.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 164.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 163.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 161.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 160.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 157.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 157.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 157.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 156.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 156.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 154.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 153.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 153.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 152.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 151.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 150.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 150.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 149.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 147.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 146.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 146.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 146.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 145.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 144.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 144.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 142.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 142.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 142.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 142.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 141.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 139.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 139.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 138.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 137.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 137.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 137.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 137.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 136.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 135.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 135.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 135.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 135.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 134.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 134.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 134.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 134.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 133.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 132.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 132.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 131.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 131.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 131.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 130.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 128.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 128.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 127.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 127.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 127.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 127.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 127.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 126.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 125.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 125.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 124.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 124.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 124.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 124.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 123.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 122.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 122.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 122.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 121.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 119.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 119.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 119.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 118.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 118.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 117.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 117.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 117.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 117.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 116.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 115.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 115.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 114.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 114.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 114.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 113.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 111.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 110.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 110.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 109.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 109.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 107.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 107.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 106.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 106.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 106.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 105.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 105.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 105.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 103.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 102.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 101.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 99.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 99.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 99.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 99.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 99.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 98.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 97.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 97.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 96.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 96.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 95.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 95.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 95.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 94.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 94.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 92.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 92.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 92.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 92.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 91.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 89.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 88.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 88.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 88.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 88.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 88.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 87.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 86.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 86.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 86.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 85.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 85.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 85.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 82.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 82.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 81.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 81.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 81.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 81.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 81.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 80.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 78.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 78.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 78.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 77.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 76.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 75.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 75.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 75.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 75.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 75.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 75.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 74.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 74.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 74.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 74.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 73.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 73.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 72.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 72.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 72.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 71.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 71.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 69.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 69.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 68.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 67.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 66.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 65.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 63.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 63.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 63.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 63.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 63.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 62.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 60.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 59.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 57.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 57.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 56.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 55.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 54.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 54.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 54.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 54.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 53.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 53.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 53.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 53.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 53.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 51.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 51.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 50.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 50.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 49.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 48.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 47.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 47.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 47.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 45.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 44.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 44.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 44.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 44.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 43.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 43.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 43.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 42.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 42.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 42.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 41.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 40.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 40.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 40.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 38.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 35.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 35.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 34.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 33.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 33.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 32.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 32.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 31.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 30.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 30.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 29.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 28.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 28.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 27.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 26.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 25.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 25.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 25.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 25.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 24.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 24.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 24.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 24.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 23.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 21.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 20.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 20.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 18.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 17.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 17.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 17.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 16.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 15.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 13.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 13.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 12.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 9.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 9.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 7.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 6.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 2.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 168.8
FF:10164-103B2 76 years, female 168.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.6
Pig sample Sample description nTPM
Caudate
nTPM: 301.6
Samples: 4

Max nTPM: 387.3
Min nTPM: 220.3
Sample A Female 220.3
Sample B Female 284.9
Sample C Male 387.3
Sample D Male 313.9

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