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  • SUMMARY

  • TISSUE

  • BRAIN

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PSD
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:325.0 nTPM
FANTOM5:443.8 Scaled Tags Per Million
Pig:169.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA059237
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 325.0
Samples: 300

Max nTPM: 842.3
Min nTPM: 15.7
Std nTPM: 161.7
Median nTPM: 307.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 842.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 814.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 790.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 773.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 730.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 715.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 701.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 685.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 679.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 678.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 668.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 648.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 641.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 635.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 623.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 623.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 592.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 579.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 577.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 573.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 568.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 560.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 556.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 556.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 549.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 543.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 539.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 520.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 519.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 519.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 515.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 513.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 512.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 501.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 500.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 499.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 497.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 493.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 492.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 489.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 488.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 488.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 488.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 486.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 486.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 485.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 483.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 483.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 482.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 482.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 481.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 480.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 480.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 480.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 475.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 472.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 469.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 469.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 468.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 464.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 462.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 462.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 461.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 460.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 459.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 457.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 455.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 454.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 454.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 453.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 451.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 450.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 446.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 443.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 442.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 441.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 440.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 436.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 436.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 436.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 425.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 424.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 424.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 419.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 418.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 418.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 415.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 413.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 413.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 413.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 411.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 410.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 409.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 409.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 408.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 407.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 405.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 399.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 399.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 398.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 397.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 396.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 394.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 388.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 387.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 385.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 384.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 384.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 382.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 377.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 376.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 373.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 372.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 370.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 368.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 367.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 364.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 361.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 359.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 359.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 358.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 357.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 352.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 351.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 347.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 346.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 343.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 340.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 338.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 337.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 336.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 336.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 333.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 332.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 331.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 331.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 330.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 327.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 326.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 326.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 324.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 323.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 322.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 316.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 315.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 315.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 312.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 311.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 310.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 310.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 305.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 304.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 302.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 302.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 301.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 301.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 300.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 299.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 297.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 297.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 296.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 292.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 292.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 290.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 288.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 287.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 286.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 286.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 286.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 285.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 285.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 279.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 279.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 278.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 278.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 277.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 274.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 273.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 273.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 271.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 270.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 268.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 262.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 261.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 259.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 255.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 255.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 253.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 252.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 249.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 249.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 248.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 248.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 247.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 246.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 246.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 246.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 246.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 245.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 245.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 244.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 242.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 240.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 234.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 234.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 234.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 232.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 232.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 231.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 231.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 226.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 225.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 224.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 224.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 224.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 222.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 218.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 218.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 218.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 210.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 209.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 204.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 202.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 202.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 200.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 200.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 198.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 197.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 196.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 192.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 192.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 191.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 190.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 189.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 189.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 188.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 184.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 182.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 178.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 178.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 174.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 174.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 171.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 170.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 169.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 167.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 166.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 159.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 158.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 157.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 155.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 155.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 153.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 151.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 149.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 149.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 148.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 148.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 146.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 146.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 145.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 144.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 143.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 138.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 134.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 129.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 125.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 125.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 123.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 121.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 121.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 117.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 117.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 115.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 115.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 112.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 110.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 105.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 96.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 95.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 91.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 88.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 87.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 87.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 78.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 75.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 74.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 71.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 66.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 53.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 53.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 51.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 51.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 42.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 42.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 32.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 25.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 15.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

443.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 443.8
FF:10164-103B2 76 years, female 443.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.6
Pig sample Sample description nTPM
Caudate
nTPM: 169.6
Samples: 4

Max nTPM: 204.3
Min nTPM: 129.3
Sample A Female 129.3
Sample B Female 185.6
Sample C Male 204.3
Sample D Male 159.1

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