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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:363.3 nTPM
GTEx:363.3 nTPM
FANTOM5:63.7 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 363.3
Samples: 105

Max nTPM: 547.8
Min nTPM: 208.5
Std nTPM: 64.1
Median nTPM:
6_1 73 years, female 547.8
352_1 62 years, male 530.1
218_1 71 years, female 522.1
319_1 81 years, male 458.9
375_1 74 years, female 455.9
35_1 74 years, female 452.8
354_1 81 years, female 446.1
137_1 83 years, male 445.9
377_1 82 years, female 445.8
386_1 76 years, male 443.7
117_1 61 years, male 442.7
355_1 70 years, female 441.0
321_1 62 years, female 439.7
425_1 59 years, female 437.7
99_1 64 years, male 432.7
379_1 60 years, male 428.2
246_1 77 years, male 424.4
243_1 75 years, male 422.5
237_1 82 years, male 421.4
229_1 69 years, female 419.2
353_1 82 years, female 418.1
350_1 84 years, female 417.8
2_1 77 years, female 417.7
17_1 71 years, male 416.5
447_1 81 years, male 416.0
376_1 75 years, female 404.6
322_1 76 years, male 400.1
349_1 83 years, male 396.4
307_1 66 years, female 396.3
317_1 60 years, male 395.2
389_1 86 years, female 394.4
126_1 63 years, male 392.9
311_1 78 years, male 392.3
405_1 91 years, male 391.0
266_1 85 years, male 390.3
335_1 73 years, female 390.3
292_1 71 years, male 390.1
347_1 72 years, male 385.7
173_1 67 years, male 383.3
145_1 84 years, male 380.8
172_1 72 years, female 380.1
115_1 83 years, male 379.3
4_1 88 years, female 377.7
316_1 62 years, male 377.4
356_1 87 years, female 376.7
189_1 76 years, male 374.6
320_1 89 years, female 373.9
43_1 64 years, female 373.4
293_1 68 years, female 373.4
251_1 78 years, male 373.2
9_1 66 years, female 373.0
163_1 78 years, male 372.4
394_1 75 years, female 372.3
351_1 91 years, male 372.1
265_1 87 years, male 370.8
526_1 61 years, male 365.4
286_1 68 years, female 363.8
162_1 79 years, female 362.6
406_1 79 years, male 358.8
217_1 76 years, male 353.9
495_1 57 years, female 352.6
120_1 70 years, female 350.0
177_1 74 years, male 349.4
468_1 89 years, male 344.3
142_1 61 years, female 343.9
153_1 70 years, female 343.5
480_1 63 years, male 340.8
18_1 88 years, male 337.3
404_1 82 years, female 334.9
384_1 83 years, male 334.2
81_1 67 years, male 331.6
348_1 84 years, male 329.9
318_1 68 years, male 327.9
139_1 64 years, female 327.5
503_1 68 years, male 326.2
41_1 94 years, female 325.3
295_1 61 years, female 324.7
109_1 81 years, female 323.4
315_1 62 years, female 322.8
119_1 70 years, female 321.2
499_1 55 years, female 319.0
254_1 77 years, female 317.6
291_1 76 years, male 315.4
324_1 76 years, male 315.1
32_1 67 years, male 313.9
518_1 75 years, female 307.6
396_1 62 years, male 305.2
452_1 88 years, female 298.6
415_1 77 years, female 296.6
42_1 85 years, male 294.6
517_1 88 years, male 292.6
288_1 66 years, female 286.3
491_1 89 years, female 284.4
414_1 84 years, female 280.9
308_1 70 years, female 279.6
466_1 57 years, female 276.9
490_1 67 years, female 276.8
89_1 63 years, male 270.7
264_1 73 years, female 267.3
313_1 79 years, female 264.5
149_1 88 years, male 258.8
314_1 67 years, male 239.8
506_1 65 years, male 221.5
413_1 59 years, female 210.5
501_1 88 years, male 208.5
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 63.7
FF:10030-101E3 24-65 years, mixed 63.7

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