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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:129.7 nTPM
FANTOM5:259.7 Scaled Tags Per Million
Pig:208.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008160
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 129.7
Samples: 300

Max nTPM: 358.9
Min nTPM: 1.9
Std nTPM: 90.5
Median nTPM: 118.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 358.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 349.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 348.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 335.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 328.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 328.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 325.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 320.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 309.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 307.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 304.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 302.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 300.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 297.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 297.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 295.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 295.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 294.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 293.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 291.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 288.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 288.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 286.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 285.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 283.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 281.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 277.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 276.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 273.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 272.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 270.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 269.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 266.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 262.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 259.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 257.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 257.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 256.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 252.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 245.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 244.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 242.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 237.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 234.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 231.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 228.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 228.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 227.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 227.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 224.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 224.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 219.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 217.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 216.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 215.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 214.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 214.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 211.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 211.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 207.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 207.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 205.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 203.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 201.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 201.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 199.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 198.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 198.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 198.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 197.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 197.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 197.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 196.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 195.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 192.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 192.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 188.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 188.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 187.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 187.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 187.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 187.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 184.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 183.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 182.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 179.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 179.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 179.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 178.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 178.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 178.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 178.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 177.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 177.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 177.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 176.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 175.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 173.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 172.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 169.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 169.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 167.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 166.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 164.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 164.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 162.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 161.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 159.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 159.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 158.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 155.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 154.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 154.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 153.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 152.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 151.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 149.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 149.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 148.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 146.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 145.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 143.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 143.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 143.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 142.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 142.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 141.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 141.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 140.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 139.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 137.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 135.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 133.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 132.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 130.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 130.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 129.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 129.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 126.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 126.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 126.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 125.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 123.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 123.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 123.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 123.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 121.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 121.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 119.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 118.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 118.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 117.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 116.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 112.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 112.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 111.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 111.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 110.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 110.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 109.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 107.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 105.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 105.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 103.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 103.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 102.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 102.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 102.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 101.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 101.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 99.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 98.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 97.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 97.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 96.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 95.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 93.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 93.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 93.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 92.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 92.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 91.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 91.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 91.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 91.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 87.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 87.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 86.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 86.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 86.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 86.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 83.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 82.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 79.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 79.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 78.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 77.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 76.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 76.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 76.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 74.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 73.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 72.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 72.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 69.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 69.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 65.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 65.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 64.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 63.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 59.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 58.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 57.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 54.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 52.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 52.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 52.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 52.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 49.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 49.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 48.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 48.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 48.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 47.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 45.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 43.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 43.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 42.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 41.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 41.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 41.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 39.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 38.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 38.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 38.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 38.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 37.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 37.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 37.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 35.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 35.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 34.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 33.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 33.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 32.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 30.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 30.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 29.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 29.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 29.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 28.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 28.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 27.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 27.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 26.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 26.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 26.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 26.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 26.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 25.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 25.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 23.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 23.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 22.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 21.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 21.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 21.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 21.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 20.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 20.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 20.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 19.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 18.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 18.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 18.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 18.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 17.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 16.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 16.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 14.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 14.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 14.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 13.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 12.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 12.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 11.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 11.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 10.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 8.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 7.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 5.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 4.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 4.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

259.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 259.7
FF:10164-103B2 76 years, female 259.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.7
Pig sample Sample description nTPM
Caudate
nTPM: 208.7
Samples: 4

Max nTPM: 274.0
Min nTPM: 136.7
Sample A Female 136.7
Sample B Female 206.0
Sample C Male 274.0
Sample D Male 218.1

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