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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:206.5 nTPM
FANTOM5:313.7 Scaled Tags Per Million
Pig:183.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB005052
Glial cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 206.5
Samples: 300

Max nTPM: 379.5
Min nTPM: 124.0
Std nTPM: 49.4
Median nTPM: 197.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 379.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 357.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 353.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 352.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 345.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 336.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 335.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 330.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 320.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 313.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 308.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 306.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 306.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 302.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 298.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 297.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 292.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 290.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 284.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 283.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 280.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 278.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 278.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 277.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 275.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 274.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 274.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 273.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 272.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 271.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 271.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 270.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 269.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 267.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 266.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 265.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 264.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 263.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 263.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 263.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 263.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 262.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 261.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 261.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 260.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 259.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 257.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 256.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 255.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 255.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 255.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 254.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 254.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 253.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 253.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 252.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 252.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 250.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 248.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 248.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 247.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 247.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 247.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 246.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 245.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 244.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 243.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 243.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 242.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 242.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 242.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 241.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 241.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 241.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 240.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 240.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 239.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 239.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 238.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 237.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 237.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 235.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 234.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 234.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 233.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 232.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 232.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 232.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 231.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 231.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 230.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 228.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 228.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 228.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 227.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 226.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 226.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 226.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 226.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 226.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 225.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 224.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 224.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 224.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 224.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 224.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 222.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 222.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 221.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 220.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 220.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 219.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 218.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 216.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 216.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 216.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 215.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 215.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 215.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 214.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 214.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 213.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 212.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 212.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 211.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 210.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 210.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 209.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 209.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 208.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 208.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 207.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 207.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 206.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 206.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 204.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 203.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 202.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 202.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 202.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 202.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 201.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 200.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 200.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 199.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 198.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 198.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 198.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 198.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 197.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 197.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 197.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 196.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 196.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 196.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 196.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 194.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 194.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 193.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 193.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 193.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 192.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 191.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 191.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 191.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 190.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 190.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 190.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 189.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 188.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 188.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 187.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 187.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 187.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 185.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 185.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 185.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 184.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 183.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 182.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 182.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 182.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 181.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 181.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 181.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 180.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 179.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 179.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 179.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 179.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 179.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 179.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 179.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 178.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 178.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 177.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 177.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 176.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 176.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 176.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 176.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 175.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 174.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 174.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 174.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 173.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 172.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 172.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 172.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 171.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 171.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 170.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 170.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 169.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 169.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 169.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 169.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 169.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 169.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 169.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 168.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 168.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 168.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 168.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 167.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 167.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 167.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 167.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 167.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 167.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 166.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 166.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 166.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 165.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 165.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 165.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 164.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 164.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 164.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 163.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 163.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 162.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 161.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 161.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 159.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 158.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 158.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 157.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 157.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 157.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 157.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 156.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 156.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 156.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 156.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 155.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 154.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 154.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 154.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 154.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 153.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 153.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 153.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 152.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 152.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 152.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 152.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 151.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 151.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 151.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 150.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 150.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 149.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 149.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 149.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 148.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 148.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 147.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 146.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 146.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 146.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 145.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 144.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 143.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 143.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 142.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 142.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 142.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 141.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 141.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 139.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 136.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 133.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 132.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 132.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 131.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 131.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 129.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 127.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 124.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

313.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 313.7
FF:10164-103B2 76 years, female 313.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.9
Pig sample Sample description nTPM
Caudate
nTPM: 183.9
Samples: 4

Max nTPM: 200.6
Min nTPM: 167.7
Sample A Female 187.4
Sample B Female 179.7
Sample C Male 200.6
Sample D Male 167.7

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