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PDZD4
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PDZD4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:149.8 nTPM
FANTOM5:167.5 Scaled Tags Per Million
Pig:144.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003878
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 149.8
Samples: 300

Max nTPM: 357.5
Min nTPM: 16.1
Std nTPM: 75.3
Median nTPM: 143.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 357.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 339.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 337.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 333.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 332.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 328.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 322.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 321.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 313.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 311.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 299.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 297.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 292.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 291.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 289.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 287.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 286.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 283.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 281.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 279.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 273.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 271.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 270.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 268.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 267.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 265.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 263.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 260.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 255.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 254.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 253.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 253.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 252.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 251.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 248.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 248.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 245.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 245.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 244.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 243.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 242.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 238.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 237.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 234.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 233.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 233.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 230.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 229.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 228.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 228.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 227.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 223.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 223.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 223.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 220.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 217.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 217.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 216.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 216.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 215.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 215.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 214.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 213.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 212.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 211.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 210.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 209.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 207.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 206.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 205.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 205.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 204.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 201.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 198.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 196.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 196.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 195.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 195.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 195.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 195.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 194.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 194.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 191.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 190.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 189.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 189.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 188.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 186.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 185.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 185.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 184.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 184.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 184.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 183.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 183.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 182.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 181.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 181.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 179.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 179.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 176.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 176.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 175.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 175.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 174.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 174.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 173.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 172.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 172.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 171.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 171.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 171.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 170.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 169.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 167.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 167.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 166.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 166.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 165.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 165.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 165.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 164.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 163.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 162.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 161.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 160.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 160.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 159.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 159.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 159.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 159.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 157.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 155.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 155.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 153.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 153.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 151.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 151.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 150.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 149.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 149.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 149.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 149.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 149.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 149.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 147.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 145.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 145.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 145.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 143.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 142.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 142.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 142.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 141.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 140.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 140.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 139.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 139.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 137.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 136.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 136.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 135.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 135.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 134.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 134.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 132.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 132.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 132.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 130.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 129.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 129.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 128.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 128.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 128.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 127.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 126.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 126.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 124.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 123.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 122.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 122.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 121.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 121.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 119.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 119.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 119.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 118.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 115.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 115.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 114.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 114.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 113.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 112.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 111.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 110.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 109.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 109.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 109.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 107.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 106.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 106.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 105.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 105.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 103.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 102.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 102.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 102.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 100.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 100.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 99.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 94.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 93.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 92.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 92.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 92.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 92.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 91.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 91.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 91.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 90.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 87.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 87.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 87.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 86.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 84.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 83.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 83.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 82.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 82.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 80.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 79.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 77.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 77.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 75.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 74.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 74.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 73.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 73.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 73.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 73.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 73.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 71.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 71.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 70.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 70.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 70.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 69.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 68.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 67.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 67.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 67.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 67.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 66.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 66.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 66.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 66.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 65.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 65.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 65.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 64.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 63.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 62.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 62.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 62.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 61.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 61.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 58.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 57.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 57.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 56.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 55.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 54.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 54.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 53.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 49.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 48.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 47.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 46.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 44.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 44.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 43.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 43.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 42.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 41.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 39.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 39.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 38.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 38.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 37.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 31.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 30.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 30.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 24.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 18.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 16.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 167.5
FF:10164-103B2 76 years, female 167.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.0
Pig sample Sample description nTPM
Caudate
nTPM: 144.1
Samples: 4

Max nTPM: 180.4
Min nTPM: 93.9
Sample A Female 93.9
Sample B Female 156.6
Sample C Male 180.4
Sample D Male 145.3

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