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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • FGFR3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:148.8 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:40.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB004231
Glial cells Not detected
Neuronal cells Not detected

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 148.8
Samples: 300

Max nTPM: 518.1
Min nTPM: 10.8
Std nTPM: 76.4
Median nTPM: 135.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 518.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 441.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 407.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 369.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 355.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 344.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 338.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 335.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 323.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 321.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 316.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 294.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 286.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 282.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 276.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 276.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 275.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 273.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 273.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 272.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 268.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 263.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 258.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 257.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 257.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 255.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 254.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 254.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 253.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 253.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 252.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 252.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 251.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 251.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 250.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 246.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 243.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 242.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 241.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 240.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 232.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 232.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 229.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 226.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 221.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 220.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 218.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 217.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 215.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 211.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 208.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 208.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 207.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 207.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 205.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 205.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 204.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 204.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 203.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 202.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 202.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 201.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 199.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 196.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 196.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 195.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 194.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 191.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 190.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 190.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 190.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 190.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 189.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 188.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 187.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 186.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 186.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 186.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 185.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 185.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 184.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 184.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 183.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 183.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 182.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 181.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 181.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 180.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 179.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 179.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 179.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 178.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 178.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 177.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 177.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 176.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 176.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 175.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 174.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 171.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 170.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 168.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 168.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 167.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 167.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 167.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 165.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 165.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 165.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 164.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 164.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 164.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 161.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 160.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 160.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 159.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 159.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 158.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 157.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 156.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 156.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 155.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 155.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 154.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 154.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 153.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 152.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 150.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 148.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 148.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 147.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 146.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 146.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 146.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 146.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 145.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 143.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 143.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 143.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 142.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 142.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 142.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 141.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 141.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 141.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 141.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 140.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 137.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 137.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 135.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 135.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 135.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 134.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 134.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 133.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 133.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 133.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 132.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 132.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 132.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 131.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 131.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 130.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 130.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 129.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 129.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 128.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 128.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 127.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 126.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 124.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 124.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 123.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 123.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 123.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 122.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 122.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 122.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 122.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 122.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 121.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 120.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 119.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 119.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 119.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 119.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 118.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 118.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 117.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 117.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 117.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 117.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 116.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 115.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 114.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 113.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 112.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 111.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 111.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 111.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 109.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 109.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 108.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 108.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 108.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 108.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 108.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 106.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 106.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 106.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 105.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 104.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 104.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 104.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 103.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 102.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 102.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 102.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 101.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 101.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 100.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 100.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 100.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 98.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 97.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 96.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 95.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 95.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 95.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 94.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 92.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 91.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 91.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 90.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 89.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 89.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 88.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 88.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 86.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 86.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 85.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 84.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 83.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 83.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 81.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 80.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 79.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 79.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 79.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 77.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 76.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 74.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 74.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 74.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 74.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 73.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 71.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 69.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 68.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 65.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 65.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 63.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 63.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 63.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 62.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 60.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 59.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 58.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 57.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 57.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 56.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 56.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 53.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 52.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 52.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 47.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 45.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 45.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 43.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 43.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 42.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 41.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 40.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 38.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 37.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 33.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 32.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 31.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 29.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 25.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 21.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 17.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 12.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 11.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 10.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 53.4
FF:10164-103B2 76 years, female 53.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.3
Pig sample Sample description nTPM
Caudate
nTPM: 40.3
Samples: 4

Max nTPM: 47.6
Min nTPM: 28.0
Sample A Female 28.0
Sample B Female 44.1
Sample C Male 47.6
Sample D Male 41.3

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