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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PFN2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:181.8 nTPM
FANTOM5:196.6 Scaled Tags Per Million
Pig:352.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035611Antibody CAB037073
Glial cells LowHigh
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 181.8
Samples: 300

Max nTPM: 424.1
Min nTPM: 71.9
Std nTPM: 52.4
Median nTPM: 178.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 424.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 413.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 401.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 342.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 337.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 320.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 319.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 301.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 297.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 293.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 282.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 278.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 275.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 275.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 274.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 273.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 269.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 268.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 267.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 264.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 258.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 254.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 252.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 249.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 249.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 248.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 247.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 247.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 245.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 245.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 244.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 244.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 242.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 242.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 242.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 241.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 236.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 232.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 231.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 231.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 230.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 230.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 228.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 228.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 225.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 224.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 223.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 223.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 222.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 221.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 221.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 220.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 220.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 220.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 219.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 219.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 218.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 217.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 216.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 215.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 215.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 214.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 214.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 213.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 212.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 211.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 211.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 211.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 211.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 211.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 210.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 209.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 209.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 209.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 209.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 208.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 208.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 207.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 206.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 206.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 206.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 205.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 205.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 204.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 204.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 204.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 203.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 202.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 201.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 201.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 201.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 201.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 200.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 200.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 200.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 200.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 200.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 199.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 198.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 198.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 198.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 197.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 196.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 195.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 194.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 194.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 193.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 193.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 193.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 192.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 192.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 191.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 191.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 190.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 190.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 189.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 188.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 188.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 188.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 188.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 187.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 187.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 186.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 186.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 186.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 186.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 186.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 186.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 186.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 184.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 184.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 184.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 183.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 183.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 183.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 183.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 182.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 182.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 182.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 182.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 182.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 182.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 182.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 182.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 181.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 180.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 180.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 178.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 178.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 178.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 178.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 177.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 176.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 176.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 176.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 176.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 175.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 174.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 173.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 173.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 172.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 172.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 172.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 171.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 170.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 170.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 170.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 170.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 170.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 169.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 169.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 169.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 169.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 169.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 168.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 167.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 167.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 166.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 166.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 166.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 166.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 165.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 163.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 162.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 162.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 162.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 162.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 161.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 161.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 161.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 160.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 160.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 160.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 159.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 159.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 158.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 157.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 156.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 155.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 153.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 153.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 153.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 153.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 153.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 152.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 151.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 151.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 151.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 151.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 151.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 151.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 150.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 150.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 148.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 148.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 148.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 147.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 147.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 147.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 146.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 146.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 145.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 144.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 144.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 143.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 143.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 143.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 143.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 142.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 142.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 141.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 141.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 141.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 140.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 140.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 139.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 139.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 139.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 139.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 139.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 138.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 138.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 138.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 136.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 136.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 136.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 135.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 135.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 135.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 135.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 134.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 134.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 133.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 133.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 133.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 132.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 132.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 129.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 129.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 129.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 129.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 129.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 129.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 129.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 128.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 128.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 127.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 127.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 127.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 125.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 125.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 124.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 124.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 123.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 122.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 121.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 120.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 120.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 120.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 118.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 117.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 115.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 114.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 114.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 110.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 108.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 104.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 103.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 101.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 100.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 99.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 98.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 94.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 93.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 86.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 81.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 79.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 77.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 71.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 196.6
FF:10164-103B2 76 years, female 196.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.1
Pig sample Sample description nTPM
Caudate
nTPM: 352.2
Samples: 4

Max nTPM: 409.2
Min nTPM: 331.9
Sample A Female 333.9
Sample B Female 331.9
Sample C Male 409.2
Sample D Male 333.6

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