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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • ENO1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:768.3 nTPM
FANTOM5:676.5 Scaled Tags Per Million
Pig:286.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB018614Antibody CAB069394Antibody CAB080034
Glial cells MediumNot detectedHigh
Neuronal cells LowLowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

768.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 768.3
Samples: 300

Max nTPM: 1619.0
Min nTPM: 302.1
Std nTPM: 212.4
Median nTPM: 736.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1619.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1567.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1494.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1472.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1436.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1431.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1257.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1240.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1235.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1227.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1200.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1199.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1187.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1177.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1173.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1166.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1125.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1122.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1115.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1090.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1089.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1083.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1081.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1073.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1072.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1068.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1066.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1060.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1057.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1056.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1055.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1050.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1046.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1040.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1036.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1018.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1002.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1001.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 993.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 988.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 983.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 982.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 981.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 973.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 968.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 959.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 954.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 949.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 946.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 946.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 939.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 939.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 938.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 930.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 929.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 925.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 911.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 907.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 906.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 905.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 904.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 903.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 903.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 901.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 898.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 895.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 894.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 890.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 889.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 889.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 888.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 886.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 885.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 884.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 882.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 882.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 879.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 879.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 878.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 877.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 876.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 875.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 874.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 874.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 870.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 870.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 870.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 860.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 858.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 856.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 854.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 848.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 844.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 839.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 837.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 832.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 832.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 830.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 829.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 827.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 825.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 822.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 819.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 814.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 812.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 810.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 810.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 810.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 809.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 803.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 801.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 799.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 798.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 797.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 795.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 794.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 792.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 791.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 790.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 790.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 789.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 787.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 783.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 776.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 774.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 773.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 770.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 769.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 769.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 768.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 768.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 767.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 765.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 763.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 762.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 756.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 755.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 754.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 754.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 753.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 753.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 751.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 748.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 746.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 745.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 744.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 743.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 741.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 741.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 736.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 736.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 732.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 730.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 728.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 727.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 726.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 725.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 724.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 724.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 724.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 723.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 723.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 723.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 721.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 715.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 712.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 706.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 705.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 703.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 703.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 701.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 701.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 700.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 700.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 700.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 698.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 695.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 695.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 694.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 693.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 692.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 691.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 689.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 684.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 684.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 682.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 682.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 682.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 680.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 680.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 678.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 676.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 676.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 675.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 674.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 673.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 672.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 672.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 671.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 671.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 668.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 667.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 667.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 666.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 666.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 664.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 661.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 659.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 659.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 658.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 657.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 654.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 654.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 654.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 652.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 648.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 647.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 644.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 644.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 642.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 641.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 641.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 640.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 636.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 629.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 629.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 627.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 624.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 621.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 618.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 614.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 613.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 611.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 610.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 609.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 609.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 608.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 605.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 604.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 600.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 599.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 596.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 595.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 595.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 593.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 589.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 589.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 586.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 586.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 583.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 583.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 582.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 579.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 579.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 576.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 575.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 573.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 569.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 566.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 561.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 560.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 557.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 555.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 553.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 552.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 550.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 549.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 542.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 539.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 538.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 535.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 523.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 519.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 518.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 518.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 517.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 514.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 512.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 505.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 503.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 501.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 492.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 488.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 484.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 481.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 479.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 468.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 466.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 460.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 453.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 431.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 430.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 412.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 411.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 390.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 375.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 363.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 312.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 305.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 302.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

676.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 676.5
FF:10164-103B2 76 years, female 676.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.2
Pig sample Sample description nTPM
Caudate
nTPM: 286.2
Samples: 4

Max nTPM: 363.4
Min nTPM: 232.0
Sample A Female 232.0
Sample B Female 296.8
Sample C Male 363.4
Sample D Male 252.4

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