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FSCN1
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  • SUMMARY

  • TISSUE

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  • STRUCTURE

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  • FSCN1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:60.1 nTPM
FANTOM5:111.0 Scaled Tags Per Million
Pig:128.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA005723Antibody HPA050654Antibody CAB000121Antibody CAB035991
Glial cells HighHighLowHigh
Neuronal cells LowNot detectedNot detectedNot detected









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.1
Samples: 300

Max nTPM: 133.1
Min nTPM: 9.3
Std nTPM: 24.3
Median nTPM: 58.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 133.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 129.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 123.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 116.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 115.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 114.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 113.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 113.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 111.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 108.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 105.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 104.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 102.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 102.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 101.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 101.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 101.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 100.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 100.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 96.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 95.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 95.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 94.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 94.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 94.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 92.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 92.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 92.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 91.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 91.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 91.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 91.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 91.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 90.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 90.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 90.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 89.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 89.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 89.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 88.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 88.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 87.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 87.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 87.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 86.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 85.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 85.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 84.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 83.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 82.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 82.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 82.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 82.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 82.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 82.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 81.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 81.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 81.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 81.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 80.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 80.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 80.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 80.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 80.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 80.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 80.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 80.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 79.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 79.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 79.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 79.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 79.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 78.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 78.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 78.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 77.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 77.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 77.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 77.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 77.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 76.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 76.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 75.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 75.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 75.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 75.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 75.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 75.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 74.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 74.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 73.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 72.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 72.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 72.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 72.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 72.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 72.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 72.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 71.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 71.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 71.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 70.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 70.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 70.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 69.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 69.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 69.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 69.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 68.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 68.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 67.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 67.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 67.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 67.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 67.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 66.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 65.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 65.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 65.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 65.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 65.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 64.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 64.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 63.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 63.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 63.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 63.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 63.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 62.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 62.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 62.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 62.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 61.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 61.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 61.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 61.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 61.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 61.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 60.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 60.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 59.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 59.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 59.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 59.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 58.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 58.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 57.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 57.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 57.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 57.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 57.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 56.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 56.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 56.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 56.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 56.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 56.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 55.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 55.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 54.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 54.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 54.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 54.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 54.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 54.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 53.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 53.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 52.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 52.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 52.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 51.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 51.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 51.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 51.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 51.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 50.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 50.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 50.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 50.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 50.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 50.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 50.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 49.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 49.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 49.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 49.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 49.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 48.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 47.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 47.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 47.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 47.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 47.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 47.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 46.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 46.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 46.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 45.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 45.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 45.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 44.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 44.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 44.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 43.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 43.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 43.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 43.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 43.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 42.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 42.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 42.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 41.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 41.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 40.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 40.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 40.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 40.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 40.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 40.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 39.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 39.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 39.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 38.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 38.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 38.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 38.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 38.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 38.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 38.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 37.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 37.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 37.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 36.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 36.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 36.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 36.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 35.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 35.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 35.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 35.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 35.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 35.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 34.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 34.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 34.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 34.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 34.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 34.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 34.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 34.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 33.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 33.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 33.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 33.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 33.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 33.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 33.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 33.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 32.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 32.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 32.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 31.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 31.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 30.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 29.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 29.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 28.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 28.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 28.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 28.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 27.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 27.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 26.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 26.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 26.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 26.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 26.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 24.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 24.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 23.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 22.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 21.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 21.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 20.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 18.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 17.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 16.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 15.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 13.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 13.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 12.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 9.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 111.0
FF:10164-103B2 76 years, female 111.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.4
Pig sample Sample description nTPM
Caudate
nTPM: 128.4
Samples: 4

Max nTPM: 147.1
Min nTPM: 114.1
Sample A Female 114.1
Sample B Female 130.2
Sample C Male 147.1
Sample D Male 122.0

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