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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RAP1GAP
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:160.2 nTPM
FANTOM5:695.5 Scaled Tags Per Million
Pig:304.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001922
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 160.2
Samples: 300

Max nTPM: 364.1
Min nTPM: 4.9
Std nTPM: 80.5
Median nTPM: 166.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 364.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 342.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 341.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 335.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 334.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 313.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 313.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 309.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 309.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 307.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 300.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 291.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 286.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 284.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 283.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 280.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 280.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 279.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 277.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 277.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 269.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 268.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 268.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 268.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 266.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 266.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 265.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 263.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 262.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 257.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 256.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 255.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 255.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 252.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 251.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 250.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 250.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 250.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 249.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 248.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 248.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 245.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 244.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 243.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 243.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 242.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 242.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 240.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 240.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 239.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 239.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 238.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 238.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 237.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 237.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 235.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 235.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 235.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 234.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 234.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 234.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 232.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 232.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 232.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 230.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 230.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 229.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 229.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 229.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 228.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 228.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 228.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 227.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 227.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 227.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 224.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 224.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 223.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 222.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 222.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 222.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 220.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 220.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 219.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 219.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 217.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 217.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 216.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 215.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 214.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 213.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 213.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 212.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 212.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 210.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 210.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 208.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 208.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 207.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 207.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 205.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 205.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 205.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 203.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 203.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 203.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 201.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 201.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 200.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 200.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 200.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 199.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 199.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 198.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 196.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 194.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 193.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 192.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 192.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 192.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 191.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 191.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 190.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 189.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 189.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 188.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 188.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 187.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 186.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 184.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 183.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 181.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 181.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 181.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 179.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 179.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 178.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 177.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 176.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 175.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 173.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 173.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 173.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 172.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 171.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 171.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 170.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 170.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 168.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 168.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 165.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 164.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 161.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 159.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 158.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 156.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 155.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 155.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 155.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 155.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 155.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 153.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 152.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 152.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 151.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 151.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 150.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 147.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 146.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 146.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 146.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 145.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 145.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 145.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 143.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 140.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 140.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 137.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 137.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 137.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 134.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 133.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 133.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 132.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 132.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 130.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 130.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 128.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 127.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 126.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 124.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 123.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 122.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 122.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 121.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 120.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 120.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 120.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 120.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 119.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 119.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 118.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 118.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 114.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 114.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 110.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 109.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 109.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 107.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 107.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 107.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 106.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 106.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 106.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 106.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 104.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 104.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 104.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 103.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 102.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 102.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 94.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 93.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 92.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 92.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 90.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 89.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 88.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 88.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 87.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 86.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 85.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 82.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 80.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 76.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 75.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 75.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 72.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 68.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 67.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 66.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 65.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 64.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 63.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 63.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 63.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 62.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 62.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 59.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 59.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 58.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 57.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 57.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 57.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 57.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 57.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 56.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 56.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 55.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 54.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 53.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 53.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 52.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 51.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 49.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 49.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 48.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 48.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 45.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 44.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 43.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 42.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 41.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 41.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 40.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 39.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 37.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 37.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 37.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 34.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 32.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 32.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 31.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 30.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 22.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 21.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 20.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 20.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 17.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 17.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 15.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 15.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 12.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 8.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 4.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

695.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 695.5
FF:10164-103B2 76 years, female 695.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

304.0
Pig sample Sample description nTPM
Caudate
nTPM: 304.1
Samples: 4

Max nTPM: 369.6
Min nTPM: 202.9
Sample A Female 202.9
Sample B Female 327.2
Sample C Male 369.6
Sample D Male 316.5

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