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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • VDAC3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:88.8 nTPM
FANTOM5:91.2 Scaled Tags Per Million
Pig:66.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA026864
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 88.8
Samples: 300

Max nTPM: 283.9
Min nTPM: 44.9
Std nTPM: 25.9
Median nTPM: 86.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 283.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 176.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 169.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 166.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 162.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 159.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 154.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 147.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 145.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 137.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 134.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 133.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 131.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 128.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 127.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 127.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 126.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 125.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 123.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 122.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 122.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 121.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 120.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 119.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 119.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 119.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 118.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 118.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 118.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 118.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 117.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 117.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 116.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 115.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 115.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 115.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 115.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 114.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 114.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 114.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 114.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 114.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 111.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 110.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 110.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 110.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 110.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 110.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 109.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 109.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 109.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 109.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 108.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 108.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 107.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 107.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 107.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 107.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 107.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 106.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 106.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 106.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 106.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 106.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 106.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 106.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 105.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 105.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 105.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 103.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 103.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 103.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 103.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 103.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 102.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 102.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 102.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 101.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 101.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 101.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 101.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 101.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 101.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 101.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 100.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 100.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 99.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 99.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 98.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 98.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 97.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 95.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 95.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 95.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 95.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 95.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 94.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 94.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 94.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 94.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 94.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 93.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 93.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 93.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 93.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 93.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 92.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 92.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 92.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 92.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 91.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 91.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 91.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 91.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 91.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 90.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 90.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 90.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 90.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 90.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 90.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 90.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 90.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 89.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 89.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 89.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 89.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 89.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 89.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 89.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 89.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 89.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 89.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 89.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 88.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 88.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 88.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 88.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 88.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 87.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 87.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 87.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 87.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 87.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 87.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 87.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 86.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 86.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 86.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 86.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 86.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 86.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 86.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 85.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 85.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 85.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 85.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 85.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 84.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 84.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 84.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 83.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 83.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 83.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 83.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 83.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 83.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 83.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 82.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 82.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 82.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 81.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 81.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 81.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 80.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 80.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 80.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 79.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 79.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 79.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 78.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 78.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 78.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 78.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 78.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 77.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 77.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 77.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 77.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 77.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 77.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 76.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 76.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 76.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 76.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 76.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 76.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 76.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 76.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 76.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 76.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 75.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 75.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 74.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 74.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 73.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 73.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 73.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 73.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 72.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 72.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 72.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 72.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 72.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 72.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 72.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 71.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 71.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 71.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 71.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 71.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 71.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 71.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 71.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 71.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 71.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 70.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 70.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 70.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 70.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 70.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 70.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 68.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 68.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 68.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 67.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 67.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 67.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 66.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 66.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 66.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 66.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 65.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 65.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 65.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 65.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 65.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 64.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 64.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 64.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 63.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 63.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 63.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 63.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 63.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 62.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 62.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 62.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 62.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 62.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 62.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 61.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 61.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 61.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 61.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 61.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 60.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 60.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 60.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 59.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 59.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 58.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 58.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 58.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 58.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 58.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 58.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 57.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 57.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 57.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 57.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 56.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 56.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 56.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 56.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 55.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 55.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 55.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 54.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 53.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 53.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 53.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 52.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 49.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 48.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 47.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 44.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.2
FF:10164-103B2 76 years, female 91.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.7
Pig sample Sample description nTPM
Caudate
nTPM: 66.7
Samples: 4

Max nTPM: 72.5
Min nTPM: 62.5
Sample A Female 67.4
Sample B Female 64.5
Sample C Male 72.5
Sample D Male 62.5

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