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SLC1A3
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC1A3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:423.2 nTPM
FANTOM5:1388.3 Scaled Tags Per Million
Pig:786.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA037467Antibody CAB002573
Glial cells MediumMedium
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 423.2
Samples: 300

Max nTPM: 1037.2
Min nTPM: 28.0
Std nTPM: 184.9
Median nTPM: 395.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1037.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1011.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 919.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 895.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 889.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 888.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 872.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 855.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 813.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 812.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 804.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 786.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 783.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 782.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 778.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 766.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 765.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 758.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 756.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 752.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 749.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 747.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 731.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 722.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 718.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 717.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 702.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 700.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 698.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 696.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 686.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 684.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 675.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 667.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 663.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 662.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 653.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 652.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 646.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 642.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 642.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 638.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 635.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 628.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 622.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 620.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 619.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 616.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 614.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 612.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 612.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 606.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 602.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 598.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 598.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 594.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 593.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 591.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 587.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 576.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 575.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 574.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 573.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 567.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 563.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 562.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 561.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 557.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 555.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 553.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 551.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 550.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 550.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 536.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 534.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 533.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 530.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 529.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 529.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 528.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 528.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 528.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 523.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 516.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 516.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 510.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 509.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 505.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 504.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 503.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 502.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 498.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 492.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 487.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 487.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 487.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 482.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 481.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 481.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 480.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 475.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 474.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 474.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 469.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 469.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 466.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 463.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 460.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 456.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 453.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 452.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 451.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 451.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 444.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 440.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 440.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 440.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 440.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 439.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 438.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 437.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 437.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 435.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 435.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 435.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 435.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 432.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 430.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 429.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 427.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 427.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 426.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 426.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 426.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 425.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 424.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 424.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 423.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 423.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 422.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 416.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 409.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 404.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 403.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 403.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 402.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 397.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 397.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 397.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 396.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 395.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 393.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 390.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 385.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 384.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 382.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 379.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 375.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 374.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 372.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 371.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 370.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 369.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 369.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 368.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 366.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 366.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 363.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 362.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 359.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 359.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 356.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 353.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 353.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 351.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 349.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 347.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 345.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 345.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 344.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 343.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 342.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 341.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 341.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 340.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 337.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 335.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 332.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 331.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 329.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 327.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 324.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 323.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 323.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 316.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 316.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 316.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 314.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 314.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 313.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 313.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 312.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 309.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 308.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 308.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 308.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 307.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 306.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 306.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 306.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 305.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 300.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 299.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 298.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 297.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 296.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 295.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 293.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 293.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 292.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 287.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 287.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 287.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 285.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 283.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 281.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 280.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 280.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 279.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 276.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 275.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 275.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 273.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 271.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 270.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 267.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 267.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 266.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 266.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 266.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 266.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 265.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 261.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 259.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 258.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 256.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 255.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 255.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 253.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 253.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 250.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 249.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 248.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 247.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 244.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 243.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 240.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 236.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 235.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 234.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 233.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 233.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 232.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 232.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 231.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 231.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 230.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 229.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 228.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 225.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 224.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 221.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 220.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 218.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 215.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 215.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 213.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 212.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 208.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 200.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 197.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 197.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 195.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 180.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 180.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 178.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 178.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 172.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 165.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 164.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 161.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 149.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 145.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 126.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 102.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 74.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 72.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 64.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 64.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 28.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1388.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1388.3
FF:10164-103B2 76 years, female 1388.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

786.4
Pig sample Sample description nTPM
Caudate
nTPM: 786.4
Samples: 4

Max nTPM: 982.5
Min nTPM: 586.4
Sample A Female 586.4
Sample B Female 817.2
Sample C Male 982.5
Sample D Male 759.4

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