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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • SMARCD3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:108.4 nTPM
FANTOM5:109.6 Scaled Tags Per Million
Pig:74.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA063955
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 108.4
Samples: 300

Max nTPM: 211.2
Min nTPM: 24.5
Std nTPM: 31.8
Median nTPM: 105.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 211.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 196.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 195.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 191.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 188.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 188.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 185.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 184.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 182.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 179.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 178.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 178.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 177.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 173.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 165.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 164.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 164.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 164.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 161.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 161.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 159.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 156.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 152.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 152.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 151.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 151.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 151.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 149.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 149.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 148.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 148.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 148.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 148.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 147.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 147.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 147.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 147.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 144.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 144.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 144.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 144.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 143.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 142.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 142.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 141.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 141.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 140.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 139.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 139.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 138.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 138.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 137.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 136.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 136.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 135.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 135.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 135.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 134.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 134.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 133.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 133.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 133.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 132.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 132.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 132.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 132.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 131.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 131.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 129.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 129.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 129.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 129.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 128.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 128.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 127.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 126.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 126.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 125.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 125.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 125.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 124.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 123.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 122.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 122.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 121.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 120.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 120.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 120.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 120.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 120.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 119.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 119.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 119.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 119.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 117.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 117.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 116.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 116.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 116.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 116.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 116.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 116.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 115.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 115.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 115.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 114.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 113.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 113.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 113.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 113.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 113.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 113.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 112.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 112.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 112.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 112.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 112.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 112.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 111.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 111.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 111.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 111.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 111.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 111.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 110.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 110.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 110.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 110.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 110.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 110.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 109.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 109.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 109.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 109.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 109.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 108.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 108.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 108.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 107.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 107.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 106.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 106.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 106.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 105.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 105.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 105.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 105.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 105.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 104.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 104.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 104.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 104.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 104.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 103.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 103.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 103.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 103.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 103.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 103.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 103.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 103.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 102.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 102.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 102.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 102.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 102.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 102.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 102.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 102.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 101.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 101.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 101.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 101.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 100.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 100.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 100.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 100.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 99.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 99.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 99.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 99.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 99.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 98.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 98.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 97.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 97.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 97.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 97.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 96.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 96.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 96.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 96.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 96.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 96.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 96.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 95.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 95.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 95.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 95.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 95.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 93.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 93.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 93.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 93.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 93.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 92.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 92.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 92.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 91.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 91.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 91.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 91.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 91.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 91.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 90.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 90.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 90.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 90.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 90.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 89.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 88.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 88.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 87.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 87.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 87.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 85.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 85.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 85.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 84.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 84.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 84.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 84.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 84.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 83.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 83.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 82.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 82.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 81.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 80.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 80.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 80.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 79.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 79.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 78.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 78.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 78.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 78.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 77.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 77.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 77.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 77.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 77.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 76.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 76.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 76.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 76.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 76.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 75.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 75.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 75.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 75.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 75.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 74.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 74.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 74.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 73.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 73.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 71.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 70.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 69.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 69.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 69.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 68.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 66.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 64.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 63.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 62.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 60.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 59.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 59.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 58.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 55.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 53.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 52.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 51.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 51.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 51.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 49.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 45.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 45.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 43.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 39.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 31.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 24.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 109.6
FF:10164-103B2 76 years, female 109.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.4
Pig sample Sample description nTPM
Caudate
nTPM: 74.4
Samples: 4

Max nTPM: 89.3
Min nTPM: 54.3
Sample A Female 54.3
Sample B Female 82.5
Sample C Male 89.3
Sample D Male 71.4

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