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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:50.8 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:29.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA064978Antibody CAB033965
Glial cells LowLow
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 50.8
Samples: 300

Max nTPM: 84.6
Min nTPM: 20.5
Std nTPM: 10.0
Median nTPM: 50.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 84.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 80.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 78.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 77.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 77.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 77.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 75.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 75.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 74.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 72.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 71.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 71.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 70.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 69.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 69.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 67.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 66.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 66.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 66.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 65.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 65.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 65.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 64.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 64.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 64.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 63.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 63.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 63.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 63.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 62.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 62.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 62.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 62.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 61.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 61.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 61.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 61.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 61.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 61.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 61.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 61.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 61.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 60.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 59.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 59.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 59.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 59.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 59.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 59.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 59.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 59.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 59.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 58.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 58.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 58.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 58.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 58.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 58.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 58.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 58.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 57.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 57.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 57.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 57.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 57.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 57.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 57.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 57.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 56.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 56.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 56.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 55.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 55.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 55.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 55.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 55.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 55.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 55.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 55.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 55.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 55.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 55.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 55.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 55.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 55.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 55.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 55.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 54.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 54.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 54.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 54.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 54.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 54.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 54.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 54.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 54.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 54.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 54.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 54.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 54.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 54.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 53.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 53.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 53.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 53.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 53.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 53.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 53.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 53.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 53.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 53.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 53.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 52.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 52.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 52.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 52.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 52.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 52.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 52.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 52.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 52.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 52.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 52.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 52.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 52.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 52.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 52.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 52.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 52.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 51.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 51.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 51.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 51.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 51.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 51.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 51.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 51.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 51.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 51.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 50.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 50.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 50.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 50.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 50.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 50.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 50.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 50.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 50.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 50.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 50.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 50.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 49.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 49.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 49.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 49.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 49.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 49.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 49.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 49.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 49.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 49.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 49.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 49.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 49.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 49.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 48.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 48.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 48.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 48.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 48.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 48.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 48.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 48.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 48.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 48.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 48.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 48.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 48.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 48.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 48.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 48.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 48.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 47.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 47.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 47.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 47.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 47.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 47.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 47.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 47.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 47.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 47.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 46.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 46.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 46.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 46.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 46.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 46.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 46.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 46.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 46.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 46.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 46.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 46.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 46.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 46.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 46.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 46.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 46.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 46.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 46.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 46.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 45.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 45.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 45.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 45.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 45.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 45.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 45.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 45.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 45.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 45.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 44.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 44.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 44.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 44.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 44.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 44.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 44.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 44.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 44.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 44.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 43.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 43.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 43.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 43.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 43.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 43.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 43.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 43.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 43.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 43.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 42.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 42.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 42.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 42.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 42.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 41.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 41.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 41.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 41.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 41.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 41.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 41.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 41.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 40.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 40.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 40.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 40.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 39.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 39.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 39.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 38.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 38.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 38.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 38.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 38.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 38.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 38.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 38.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 37.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 37.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 37.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 36.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 36.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 36.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 36.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 36.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 35.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 35.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 34.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 34.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 34.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 33.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 33.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 33.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 32.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 31.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 31.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 28.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 27.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 23.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 22.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 21.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 20.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.4
FF:10164-103B2 76 years, female 52.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.6
Pig sample Sample description nTPM
Caudate
nTPM: 29.6
Samples: 4

Max nTPM: 34.6
Min nTPM: 26.2
Sample A Female 26.2
Sample B Female 29.5
Sample C Male 34.6
Sample D Male 28.0

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