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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • APLP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:151.2 nTPM
FANTOM5:281.2 Scaled Tags Per Million
Pig:128.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039319
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 151.2
Samples: 300

Max nTPM: 216.6
Min nTPM: 84.6
Std nTPM: 22.0
Median nTPM: 152.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 216.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 213.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 209.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 209.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 205.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 201.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 200.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 198.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 192.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 190.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 190.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 188.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 187.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 187.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 186.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 184.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 183.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 182.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 182.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 182.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 181.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 180.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 179.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 179.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 178.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 177.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 177.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 177.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 177.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 176.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 176.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 175.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 175.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 174.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 173.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 173.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 173.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 173.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 173.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 172.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 172.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 172.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 172.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 172.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 172.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 172.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 171.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 170.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 170.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 170.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 170.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 170.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 169.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 169.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 169.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 169.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 168.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 168.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 167.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 167.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 166.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 166.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 166.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 166.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 166.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 165.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 165.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 165.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 165.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 165.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 164.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 164.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 164.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 164.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 164.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 164.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 163.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 163.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 163.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 163.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 163.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 163.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 163.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 162.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 162.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 162.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 162.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 162.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 162.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 161.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 161.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 161.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 161.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 161.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 160.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 160.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 160.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 160.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 160.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 159.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 159.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 159.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 159.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 159.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 159.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 159.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 159.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 158.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 158.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 158.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 158.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 158.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 158.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 157.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 157.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 157.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 157.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 157.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 157.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 157.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 157.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 157.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 157.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 156.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 156.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 156.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 156.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 156.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 155.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 155.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 155.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 155.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 155.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 155.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 155.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 155.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 155.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 154.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 154.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 154.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 154.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 153.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 153.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 153.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 153.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 153.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 152.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 152.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 152.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 151.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 151.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 151.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 151.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 151.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 150.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 150.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 150.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 150.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 150.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 150.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 150.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 150.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 149.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 149.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 149.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 149.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 149.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 148.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 148.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 148.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 148.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 148.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 148.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 148.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 148.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 147.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 147.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 147.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 146.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 146.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 146.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 146.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 146.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 146.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 146.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 146.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 146.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 145.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 145.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 145.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 145.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 145.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 145.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 145.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 144.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 144.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 144.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 144.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 144.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 144.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 143.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 143.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 143.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 142.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 142.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 142.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 142.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 141.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 141.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 141.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 141.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 140.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 140.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 140.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 140.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 140.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 139.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 139.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 139.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 139.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 139.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 138.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 138.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 138.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 137.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 137.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 137.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 136.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 136.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 136.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 135.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 135.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 135.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 135.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 134.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 134.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 133.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 133.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 132.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 132.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 132.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 132.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 132.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 131.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 131.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 131.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 131.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 131.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 130.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 130.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 130.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 130.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 129.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 129.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 128.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 128.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 128.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 128.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 127.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 127.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 126.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 126.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 126.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 126.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 126.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 124.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 124.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 124.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 124.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 123.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 122.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 122.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 122.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 121.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 120.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 120.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 118.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 116.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 116.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 116.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 114.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 114.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 113.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 113.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 112.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 112.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 111.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 111.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 109.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 109.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 108.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 108.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 106.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 103.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 100.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 90.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 87.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 85.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 84.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 281.2
FF:10164-103B2 76 years, female 281.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.4
Pig sample Sample description nTPM
Caudate
nTPM: 128.4
Samples: 4

Max nTPM: 148.8
Min nTPM: 110.2
Sample A Female 110.2
Sample B Female 125.7
Sample C Male 148.8
Sample D Male 128.7

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