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MAPRE3
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • MAPRE3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:113.0 nTPM
FANTOM5:360.8 Scaled Tags Per Million
Pig:182.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA009263
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 113.0
Samples: 300

Max nTPM: 237.7
Min nTPM: 34.6
Std nTPM: 37.5
Median nTPM: 112.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 237.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 209.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 206.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 195.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 186.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 185.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 185.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 181.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 181.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 177.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 175.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 174.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 173.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 172.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 170.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 170.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 170.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 169.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 169.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 169.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 168.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 168.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 168.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 168.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 168.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 165.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 165.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 164.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 164.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 163.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 162.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 161.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 159.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 159.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 158.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 157.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 157.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 157.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 157.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 155.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 154.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 154.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 153.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 152.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 152.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 152.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 151.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 151.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 151.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 150.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 150.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 150.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 149.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 149.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 149.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 149.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 149.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 149.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 148.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 148.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 148.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 148.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 147.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 147.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 147.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 146.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 146.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 145.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 144.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 144.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 144.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 144.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 144.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 143.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 142.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 142.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 142.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 142.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 142.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 141.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 139.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 138.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 138.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 137.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 136.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 136.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 136.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 135.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 134.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 134.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 133.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 131.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 131.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 130.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 130.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 130.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 130.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 129.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 129.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 129.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 128.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 128.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 128.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 128.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 128.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 127.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 127.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 127.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 127.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 127.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 126.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 126.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 126.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 125.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 125.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 125.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 125.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 124.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 124.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 124.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 124.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 124.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 123.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 123.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 123.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 122.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 122.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 122.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 122.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 122.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 122.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 122.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 121.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 120.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 120.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 117.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 117.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 117.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 116.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 116.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 116.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 116.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 115.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 114.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 114.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 113.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 113.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 112.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 112.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 111.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 110.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 110.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 110.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 108.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 108.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 108.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 108.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 108.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 108.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 108.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 107.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 107.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 107.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 106.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 106.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 106.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 106.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 106.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 105.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 105.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 105.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 105.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 104.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 103.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 103.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 103.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 102.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 102.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 102.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 102.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 102.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 101.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 101.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 101.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 101.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 100.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 100.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 99.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 99.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 98.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 98.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 98.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 97.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 97.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 96.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 96.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 95.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 93.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 93.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 93.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 92.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 92.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 91.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 90.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 90.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 89.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 88.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 87.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 87.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 87.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 86.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 86.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 86.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 85.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 84.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 84.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 83.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 83.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 82.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 81.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 81.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 81.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 80.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 80.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 80.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 80.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 79.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 79.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 78.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 78.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 78.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 77.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 77.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 76.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 76.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 75.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 75.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 75.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 75.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 75.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 75.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 73.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 73.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 73.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 72.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 72.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 72.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 71.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 71.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 71.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 70.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 70.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 70.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 70.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 70.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 69.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 69.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 69.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 69.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 68.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 68.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 67.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 67.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 66.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 66.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 66.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 65.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 65.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 64.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 64.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 64.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 63.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 62.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 61.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 59.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 59.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 58.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 56.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 55.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 55.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 55.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 55.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 55.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 55.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 55.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 55.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 55.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 51.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 51.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 49.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 48.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 47.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 44.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 39.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 37.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 34.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

360.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 360.8
FF:10164-103B2 76 years, female 360.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.6
Pig sample Sample description nTPM
Caudate
nTPM: 182.7
Samples: 4

Max nTPM: 225.0
Min nTPM: 156.5
Sample A Female 156.5
Sample B Female 187.4
Sample C Male 225.0
Sample D Male 161.7

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