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NDUFB2
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • NDUFB2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:376.4 nTPM
FANTOM5:82.4 Scaled Tags Per Million
Pig:40.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051377
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

376.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 376.4
Samples: 300

Max nTPM: 950.4
Min nTPM: 194.4
Std nTPM: 117.2
Median nTPM: 345.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 950.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 930.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 878.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 842.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 753.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 739.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 701.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 699.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 693.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 679.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 677.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 625.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 623.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 610.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 590.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 589.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 581.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 573.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 573.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 570.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 562.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 557.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 556.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 548.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 544.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 531.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 531.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 528.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 523.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 512.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 510.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 504.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 503.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 499.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 494.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 489.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 488.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 486.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 483.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 482.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 482.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 481.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 481.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 480.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 480.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 475.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 475.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 472.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 471.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 468.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 462.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 459.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 457.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 457.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 452.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 452.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 451.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 450.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 448.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 448.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 446.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 443.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 443.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 442.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 440.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 439.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 438.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 436.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 435.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 433.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 431.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 429.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 427.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 427.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 426.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 423.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 422.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 420.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 417.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 416.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 415.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 413.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 413.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 412.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 411.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 410.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 410.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 408.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 406.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 405.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 402.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 401.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 399.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 396.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 395.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 393.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 392.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 392.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 391.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 391.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 390.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 390.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 385.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 384.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 383.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 383.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 380.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 380.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 378.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 377.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 377.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 376.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 375.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 375.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 374.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 372.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 372.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 371.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 371.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 369.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 366.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 365.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 364.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 364.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 364.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 363.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 363.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 359.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 359.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 359.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 358.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 356.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 356.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 356.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 355.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 355.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 354.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 354.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 354.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 352.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 352.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 351.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 351.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 350.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 350.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 350.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 350.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 349.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 347.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 346.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 345.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 344.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 343.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 343.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 343.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 341.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 341.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 340.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 340.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 339.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 339.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 338.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 337.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 337.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 336.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 335.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 335.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 334.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 334.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 334.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 334.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 333.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 332.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 332.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 331.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 331.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 331.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 329.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 329.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 329.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 329.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 328.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 328.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 328.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 327.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 326.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 326.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 326.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 325.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 325.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 325.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 324.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 324.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 324.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 323.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 323.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 322.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 322.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 321.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 321.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 321.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 319.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 319.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 318.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 317.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 317.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 316.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 316.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 316.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 315.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 313.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 313.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 313.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 313.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 312.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 312.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 309.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 308.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 308.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 307.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 307.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 307.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 307.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 307.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 305.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 304.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 304.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 304.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 303.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 302.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 301.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 301.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 300.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 300.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 299.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 299.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 299.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 298.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 298.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 295.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 295.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 294.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 293.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 292.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 290.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 287.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 286.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 286.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 285.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 284.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 283.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 282.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 282.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 277.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 277.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 276.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 276.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 275.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 274.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 273.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 273.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 271.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 271.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 267.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 267.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 266.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 266.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 266.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 265.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 261.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 260.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 254.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 254.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 253.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 253.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 253.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 252.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 250.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 250.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 249.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 248.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 243.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 243.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 242.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 241.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 240.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 239.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 239.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 239.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 237.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 237.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 234.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 232.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 222.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 218.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 213.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 211.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 209.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 204.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 194.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.4
FF:10164-103B2 76 years, female 82.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.2
Pig sample Sample description nTPM
Caudate
nTPM: 40.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 38.7
Sample A Female 39.0
Sample B Female 41.2
Sample C Male 38.7
Sample D Male 41.9

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