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CAPN3
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • CAPN3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:81.1 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:6.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA040052
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 81.1
Samples: 300

Max nTPM: 293.9
Min nTPM: 15.1
Std nTPM: 46.2
Median nTPM: 69.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 293.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 288.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 268.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 249.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 244.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 202.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 196.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 193.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 190.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 189.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 189.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 182.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 180.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 175.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 170.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 170.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 162.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 161.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 160.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 157.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 153.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 149.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 147.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 146.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 144.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 143.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 143.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 141.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 140.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 138.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 137.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 136.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 135.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 135.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 135.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 134.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 134.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 133.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 130.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 126.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 126.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 126.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 126.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 124.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 124.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 123.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 123.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 123.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 121.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 120.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 119.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 117.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 117.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 116.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 116.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 115.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 115.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 115.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 114.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 113.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 111.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 111.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 111.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 110.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 109.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 109.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 108.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 106.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 106.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 106.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 105.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 105.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 104.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 104.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 103.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 103.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 103.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 102.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 101.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 100.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 100.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 100.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 98.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 98.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 97.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 97.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 96.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 96.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 96.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 96.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 95.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 95.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 94.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 94.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 94.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 94.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 93.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 93.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 93.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 92.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 91.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 91.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 91.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 90.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 90.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 89.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 89.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 89.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 88.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 87.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 85.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 84.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 84.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 83.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 83.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 83.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 82.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 81.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 81.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 81.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 81.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 81.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 81.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 79.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 79.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 79.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 79.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 79.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 76.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 74.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 74.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 74.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 73.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 73.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 73.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 72.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 72.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 72.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 71.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 71.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 71.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 70.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 70.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 70.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 70.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 69.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 69.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 69.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 69.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 69.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 68.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 67.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 67.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 67.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 66.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 65.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 65.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 65.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 65.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 65.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 64.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 64.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 63.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 63.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 63.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 62.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 62.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 60.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 60.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 60.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 60.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 60.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 60.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 60.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 59.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 59.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 59.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 59.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 59.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 58.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 57.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 56.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 55.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 55.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 55.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 55.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 55.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 55.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 54.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 54.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 53.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 53.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 53.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 52.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 52.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 51.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 51.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 51.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 51.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 50.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 50.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 49.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 49.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 49.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 49.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 49.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 48.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 48.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 48.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 48.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 48.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 48.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 48.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 47.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 47.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 47.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 47.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 47.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 46.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 46.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 46.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 46.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 45.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 45.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 45.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 45.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 45.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 45.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 45.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 44.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 44.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 44.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 43.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 43.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 43.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 43.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 43.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 42.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 42.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 42.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 42.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 42.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 41.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 41.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 41.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 41.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 41.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 41.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 41.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 41.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 40.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 40.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 40.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 39.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 39.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 39.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 39.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 38.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 38.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 38.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 38.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 37.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 36.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 36.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 35.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 35.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 35.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 35.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 34.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 34.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 34.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 34.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 34.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 33.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 33.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 32.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 32.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 32.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 32.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 29.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 27.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 27.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 27.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 27.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 27.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 26.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 25.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 25.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 24.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 24.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 22.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 21.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 19.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 15.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.1
FF:10164-103B2 76 years, female 55.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.5
Pig sample Sample description nTPM
Caudate
nTPM: 6.5
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.7
Sample A Female 6.7
Sample B Female 7.8
Sample C Male 5.7
Sample D Male 5.8

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