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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PHGDH
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:133.7 nTPM
FANTOM5:85.9 Scaled Tags Per Million
Pig:59.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA021241Antibody HPA024031Antibody CAB003681Antibody CAB068216
Glial cells HighHighHighHigh
Neuronal cells LowNot detected-Low








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 133.7
Samples: 300

Max nTPM: 305.4
Min nTPM: 29.3
Std nTPM: 54.0
Median nTPM: 123.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 305.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 296.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 293.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 280.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 273.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 272.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 270.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 266.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 264.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 261.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 259.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 250.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 247.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 247.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 242.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 240.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 239.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 236.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 235.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 234.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 231.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 231.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 229.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 228.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 224.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 224.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 224.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 218.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 218.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 217.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 215.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 212.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 208.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 207.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 206.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 203.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 203.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 203.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 200.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 199.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 198.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 198.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 196.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 193.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 191.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 190.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 189.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 187.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 186.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 186.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 185.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 184.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 184.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 183.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 182.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 181.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 180.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 178.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 175.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 174.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 174.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 173.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 173.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 173.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 173.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 172.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 169.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 168.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 166.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 163.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 162.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 162.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 162.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 162.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 161.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 160.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 160.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 159.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 159.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 159.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 159.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 158.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 157.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 156.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 155.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 155.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 155.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 153.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 153.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 152.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 152.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 151.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 151.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 150.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 150.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 149.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 148.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 146.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 144.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 143.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 142.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 142.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 142.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 141.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 141.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 141.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 140.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 140.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 140.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 139.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 139.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 137.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 137.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 137.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 137.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 137.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 137.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 136.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 136.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 135.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 134.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 134.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 134.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 134.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 133.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 133.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 133.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 132.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 131.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 131.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 131.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 131.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 130.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 130.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 130.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 130.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 128.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 128.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 127.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 125.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 125.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 125.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 125.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 125.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 124.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 124.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 123.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 123.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 123.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 123.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 122.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 121.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 121.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 121.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 121.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 121.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 120.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 120.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 119.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 119.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 117.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 117.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 117.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 116.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 116.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 115.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 115.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 115.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 115.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 114.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 114.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 113.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 113.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 113.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 113.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 113.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 113.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 112.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 110.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 109.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 109.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 107.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 106.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 106.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 106.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 106.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 106.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 105.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 105.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 105.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 105.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 104.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 104.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 104.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 103.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 103.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 103.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 102.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 102.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 101.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 101.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 101.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 101.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 101.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 100.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 100.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 99.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 99.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 99.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 98.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 98.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 97.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 96.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 96.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 95.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 95.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 95.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 94.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 94.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 94.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 93.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 92.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 92.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 92.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 92.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 91.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 91.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 91.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 91.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 90.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 89.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 89.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 89.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 89.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 88.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 88.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 87.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 87.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 85.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 85.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 85.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 84.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 84.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 84.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 84.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 83.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 82.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 82.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 82.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 82.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 81.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 80.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 80.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 79.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 78.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 77.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 76.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 76.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 76.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 75.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 74.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 73.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 73.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 73.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 72.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 72.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 70.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 70.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 70.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 70.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 70.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 69.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 69.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 68.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 67.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 66.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 65.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 64.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 63.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 62.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 60.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 60.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 60.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 59.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 58.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 57.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 55.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 53.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 51.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 48.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 47.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 36.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.9
FF:10164-103B2 76 years, female 85.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.9
Pig sample Sample description nTPM
Caudate
nTPM: 59.9
Samples: 4

Max nTPM: 81.2
Min nTPM: 46.8
Sample A Female 46.8
Sample B Female 58.8
Sample C Male 81.2
Sample D Male 52.8

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