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  • SUMMARY

  • TISSUE

  • BRAIN

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  • MSH2
TISSUE PRIMARY DATA PUTAMEN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
PUTAMEN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:19.7 nTPM
GTEx:9.9 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:12.7 nTPM

PUTAMEN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.7
Sample id Sample description nTPM
Putamen
nTPM: 19.7
1838 Male, age 80, right hemisphere 26.3
1937 Female, age 91, right hemisphere 26.2
2466 Female, age 79, unknown 23.2
1829 Male, age 74, unknown 22.5
2647 Male, age 75, left hemisphere 15.1
2482 Female, age 94, left hemisphere 13.0
2489 Female, age 72, unknown 11.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 9.9
Samples: 254

Max nTPM: 25.3
Min nTPM: 3.1
Std nTPM: 3.6
Median nTPM: 9.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 25.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 20.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 19.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 19.3
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 18.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 17.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 17.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 17.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 17.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 16.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 16.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 16.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 16.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 16.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 16.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 15.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 15.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 15.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 15.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 15.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 15.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 15.2
GTEX-1LSVX-0011-R7b-SM-F2T9T 60-69 years, male 15.0
GTEX-1R9PO-0011-R7b-SM-F342B 60-69 years, female 15.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 14.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 14.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 14.7
GTEX-1JMOU-0011-R7b-SM-EY5YH 60-69 years, female 14.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 14.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 14.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 14.4
GTEX-1JMLX-0011-R7a-SM-EY5ZK 50-59 years, male 14.4
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 14.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 14.3
GTEX-1PWST-0011-R7b-SM-F649N 70-79 years, male 14.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 14.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 14.2
GTEX-111FC-0011-R7a-SM-GIN8V 60-69 years, male 14.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 14.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 14.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 13.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 13.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 13.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 13.6
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 13.6
GTEX-11GS4-0011-R7a-SM-GJ3RK 60-69 years, male 13.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 13.5
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 13.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 13.5
GTEX-1R9K4-0011-R7b-SM-F3K58 60-69 years, male 13.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 13.5
GTEX-ZYY3-0011-R7a-SM-H7OGI 60-69 years, female 13.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 13.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 13.1
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 13.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 13.1
GTEX-11GSO-0011-R7b-SM-H65ZV 60-69 years, male 13.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 12.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 12.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 12.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 12.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 12.7
GTEX-1J1OQ-0011-R7b-SM-H7OGB 40-49 years, female 12.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 12.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 12.4
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 12.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 12.2
GTEX-1N2EF-0011-R7a-SM-F2T9O 60-69 years, male 12.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 12.1
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 12.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 12.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 11.9
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 11.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 11.7
GTEX-PVOW-0011-R7A-SM-H6Q8Q 40-49 years, male 11.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 11.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 11.6
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 11.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 11.3
GTEX-1QMI2-0011-R7a-SM-F648Q 60-69 years, male 11.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 11.1
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 11.1
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 11.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 11.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 11.0
GTEX-11H98-0011-R7a-SM-GHWOI 50-59 years, male 11.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 11.0
GTEX-117XS-0011-R7a-SM-GI4VO 60-69 years, male 10.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 10.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 10.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 10.7
GTEX-1JMPZ-0011-R7b-SM-F2TBB 30-39 years, male 10.6
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 10.6
GTEX-1RQEC-0011-R7b-SM-EY5ZS 60-69 years, male 10.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 10.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 10.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 10.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 10.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 10.2
GTEX-13OW7-0011-R7b-SM-H6613 50-59 years, male 10.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 10.1
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 9.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 9.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 9.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 9.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 9.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 9.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 9.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 9.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 9.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 9.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 9.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 9.7
GTEX-1LG7Y-0011-R7a-SM-F341Q 50-59 years, male 9.7
GTEX-1P4AB-0011-R7a-SM-F2TAP 50-59 years, male 9.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 9.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 9.6
GTEX-1IOXB-0011-R7b-SM-HAUZE 50-59 years, male 9.6
GTEX-1117F-0011-R7a-SM-H65ZK 60-69 years, female 9.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 9.5
GTEX-ZYFD-0011-R7a-SM-GPI8Z 50-59 years, male 9.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 9.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 9.4
GTEX-1GN1U-0011-R7a-SM-CE6RE 50-59 years, female 9.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 9.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 9.3
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 9.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 9.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 9.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 9.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 9.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 9.1
GTEX-16GPK-0011-R7b-SM-H7OF8 60-69 years, male 9.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 9.1
GTEX-1PIIG-0011-R7b-SM-F2T9Y 30-39 years, male 9.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 9.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 9.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 8.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 8.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 8.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 8.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 8.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 8.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 8.7
GTEX-1MCQQ-0011-R7a-SM-F649U 60-69 years, male 8.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 8.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 8.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 8.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 8.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 8.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 8.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 8.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 8.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 8.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 8.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 8.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 8.1
GTEX-1N2DW-0011-R7a-SM-EY5YE 50-59 years, male 8.1
GTEX-11ZU8-0011-R7a-SM-GJ3Q1 60-69 years, male 8.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 8.0
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 8.0
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 7.9
GTEX-ZAK1-0011-R7a-SM-H7OH1 50-59 years, female 7.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 7.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 7.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 7.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 7.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 7.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 7.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 7.7
GTEX-1O9I2-0011-R7a-SM-F2TAI 50-59 years, male 7.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 7.7
GTEX-14E6D-0011-R7b-SM-G9ERK 50-59 years, male 7.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 7.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 7.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 7.5
GTEX-1N2EE-0011-R7b-SM-F341E 60-69 years, male 7.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 7.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 7.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 7.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 7.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 7.3
GTEX-1IGQW-0011-R7a-SM-GPRXV 60-69 years, male 7.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 7.2
GTEX-11ZTS-0011-R7a-SM-GI4XD 60-69 years, female 7.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 7.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 7.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 7.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 7.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 7.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 6.9
GTEX-13QIC-0011-R7b-SM-GIN9M 60-69 years, female 6.9
GTEX-14JFF-0011-R7b-SM-G9ERI 60-69 years, male 6.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 6.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 6.9
GTEX-1QP6S-0011-R7b-SM-F3K5R 40-49 years, male 6.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 6.9
GTEX-1192W-0011-R7a-SM-GJ3PS 60-69 years, male 6.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 6.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 6.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 6.8
GTEX-11ZVC-0011-R7b-SM-GI4VH 50-59 years, female 6.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 6.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 6.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 6.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 6.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 6.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 6.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 6.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 6.4
GTEX-1KD5A-0011-R7a-SM-F3K5Y 50-59 years, male 6.4
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 6.4
GTEX-X4XX-0011-R7A-SM-46MWR 60-69 years, male 6.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 6.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 6.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 6.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 6.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 6.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 6.1
GTEX-13OVH-0011-R7a-SM-GI4WY 70-79 years, male 6.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 6.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 6.0
GTEX-1RDX4-0011-R7b-SM-F2TBJ 50-59 years, female 6.0
GTEX-ZAJG-0011-R7a-SM-GQ1CU 50-59 years, female 6.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 5.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 5.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 5.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 5.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 5.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 5.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 5.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 5.7
GTEX-11EI6-0011-R7a-SM-GINAN 60-69 years, male 5.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 5.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 5.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 5.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 5.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 5.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 5.4
GTEX-11O72-0011-R7b-SM-GINA9 40-49 years, male 5.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 5.2
GTEX-16XZZ-0011-R7b-SM-7MGVT 60-69 years, male 5.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 5.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 5.0
GTEX-1JN6P-0011-R7a-SM-F2TA5 60-69 years, male 5.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 4.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 4.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 4.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 4.7
GTEX-11EMC-0011-R7a-SM-GJ3PL 60-69 years, female 4.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 4.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 4.3
GTEX-1JMQL-0011-R7b-SM-F649W 50-59 years, female 3.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 42.9
FF:10176-103C5 60 years, female 42.9

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.7
Pig sample Sample description nTPM
Putamen
nTPM: 12.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.6
Sample A Female 11.7
Sample B Female 11.6
Sample C Male 15.4
Sample D Male 12.1

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