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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:122.2 nTPM
FANTOM5:222.0 Scaled Tags Per Million
Pig:71.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA027559Antibody HPA043084Antibody CAB032850
Glial cells MediumLowMedium
Neuronal cells MediumMediumNot detected






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 122.2
Samples: 300

Max nTPM: 263.2
Min nTPM: 26.3
Std nTPM: 32.8
Median nTPM: 119.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 263.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 238.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 226.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 210.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 206.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 201.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 192.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 190.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 190.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 184.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 184.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 183.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 182.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 182.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 181.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 180.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 178.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 178.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 177.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 175.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 172.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 172.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 171.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 171.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 170.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 170.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 169.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 167.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 166.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 166.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 165.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 165.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 165.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 165.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 164.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 164.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 163.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 161.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 159.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 157.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 157.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 156.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 155.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 154.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 153.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 152.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 152.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 151.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 151.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 151.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 150.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 149.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 149.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 149.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 148.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 148.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 148.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 147.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 147.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 147.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 146.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 145.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 145.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 145.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 144.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 144.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 144.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 143.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 143.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 143.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 142.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 142.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 141.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 141.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 141.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 140.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 140.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 140.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 139.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 139.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 138.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 138.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 137.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 137.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 137.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 137.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 136.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 136.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 136.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 136.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 135.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 135.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 135.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 135.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 134.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 134.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 134.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 134.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 133.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 133.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 133.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 132.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 132.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 132.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 132.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 132.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 132.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 131.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 131.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 131.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 131.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 131.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 130.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 130.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 130.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 130.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 129.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 128.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 128.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 128.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 127.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 127.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 127.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 126.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 126.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 126.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 126.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 125.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 125.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 125.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 124.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 124.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 123.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 123.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 123.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 122.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 122.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 122.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 122.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 122.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 122.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 122.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 121.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 121.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 121.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 121.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 120.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 120.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 120.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 119.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 119.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 119.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 119.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 119.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 118.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 118.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 118.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 118.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 118.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 118.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 118.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 118.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 118.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 118.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 117.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 117.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 116.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 115.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 115.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 115.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 114.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 114.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 113.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 113.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 112.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 112.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 111.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 111.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 111.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 111.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 109.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 109.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 108.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 108.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 108.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 107.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 107.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 107.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 107.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 107.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 107.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 106.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 106.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 105.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 105.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 105.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 105.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 105.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 105.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 105.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 104.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 104.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 103.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 103.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 102.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 102.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 102.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 102.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 102.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 101.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 101.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 100.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 100.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 100.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 99.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 99.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 98.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 97.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 97.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 97.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 97.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 97.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 96.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 96.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 96.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 96.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 95.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 95.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 95.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 95.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 94.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 94.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 94.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 93.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 93.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 92.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 92.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 92.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 92.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 92.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 91.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 91.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 91.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 91.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 91.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 90.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 90.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 90.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 90.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 90.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 90.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 89.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 89.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 89.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 89.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 89.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 88.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 88.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 87.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 86.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 86.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 86.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 86.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 86.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 86.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 85.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 85.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 84.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 84.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 84.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 84.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 84.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 84.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 82.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 82.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 81.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 81.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 79.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 79.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 79.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 79.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 78.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 77.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 77.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 76.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 75.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 73.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 71.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 71.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 70.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 69.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 67.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 60.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 58.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 51.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 26.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 222.0
FF:10164-103B2 76 years, female 222.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.2
Pig sample Sample description nTPM
Caudate
nTPM: 71.2
Samples: 4

Max nTPM: 83.0
Min nTPM: 52.7
Sample A Female 52.7
Sample B Female 71.1
Sample C Male 78.0
Sample D Male 83.0

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