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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ACO2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:108.3 nTPM
FANTOM5:159.4 Scaled Tags Per Million
Pig:141.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001097
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 108.3
Samples: 300

Max nTPM: 210.3
Min nTPM: 32.2
Std nTPM: 32.1
Median nTPM: 105.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 210.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 186.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 183.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 182.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 181.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 179.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 178.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 177.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 174.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 172.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 171.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 170.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 169.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 168.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 168.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 166.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 160.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 159.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 159.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 159.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 158.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 157.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 156.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 156.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 155.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 155.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 155.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 154.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 153.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 152.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 152.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 149.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 149.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 148.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 146.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 146.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 146.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 146.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 146.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 145.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 144.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 143.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 143.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 142.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 142.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 142.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 141.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 141.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 141.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 140.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 140.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 139.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 139.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 138.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 137.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 137.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 137.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 136.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 136.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 136.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 136.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 135.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 134.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 134.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 133.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 133.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 133.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 132.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 131.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 131.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 131.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 130.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 129.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 129.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 129.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 129.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 129.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 129.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 128.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 128.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 128.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 128.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 127.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 127.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 127.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 127.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 127.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 126.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 125.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 125.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 124.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 124.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 124.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 123.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 123.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 122.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 122.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 122.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 122.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 121.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 121.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 120.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 120.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 120.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 119.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 119.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 118.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 118.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 117.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 117.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 117.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 116.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 116.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 116.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 116.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 115.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 115.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 115.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 115.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 114.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 114.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 114.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 114.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 112.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 112.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 112.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 112.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 111.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 111.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 111.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 111.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 111.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 111.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 111.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 110.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 110.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 109.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 108.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 108.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 108.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 108.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 107.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 107.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 107.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 107.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 106.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 106.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 106.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 106.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 105.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 105.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 105.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 105.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 105.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 104.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 104.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 104.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 104.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 104.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 104.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 103.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 103.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 102.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 102.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 102.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 102.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 102.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 101.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 100.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 100.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 100.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 99.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 99.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 99.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 99.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 98.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 98.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 98.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 98.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 98.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 98.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 97.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 97.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 97.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 97.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 97.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 97.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 97.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 97.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 97.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 96.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 96.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 96.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 95.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 95.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 95.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 95.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 94.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 93.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 92.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 92.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 92.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 92.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 92.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 91.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 91.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 91.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 90.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 90.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 90.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 90.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 90.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 90.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 89.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 87.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 87.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 87.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 87.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 87.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 87.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 86.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 86.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 86.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 85.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 85.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 85.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 84.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 83.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 83.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 82.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 82.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 82.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 82.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 81.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 81.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 81.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 81.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 81.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 81.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 80.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 80.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 80.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 79.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 78.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 78.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 78.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 78.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 78.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 77.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 77.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 77.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 75.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 75.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 75.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 74.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 73.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 73.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 72.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 72.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 72.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 71.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 71.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 71.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 70.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 70.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 69.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 68.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 68.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 67.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 64.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 63.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 62.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 62.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 59.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 58.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 58.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 58.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 58.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 57.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 56.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 55.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 55.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 54.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 54.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 52.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 52.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 51.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 51.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 49.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 48.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 46.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 45.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 42.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 37.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 32.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 159.4
FF:10164-103B2 76 years, female 159.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.2
Pig sample Sample description nTPM
Caudate
nTPM: 141.2
Samples: 4

Max nTPM: 172.0
Min nTPM: 99.0
Sample A Female 99.0
Sample B Female 172.0
Sample C Male 166.0
Sample D Male 127.8

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