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  • SUMMARY

  • TISSUE

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • MLC1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:231.9 nTPM
FANTOM5:213.9 Scaled Tags Per Million
Pig:137.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003040
Glial cells Medium
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 231.9
Samples: 300

Max nTPM: 622.3
Min nTPM: 16.7
Std nTPM: 109.1
Median nTPM: 211.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 622.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 583.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 577.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 543.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 542.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 529.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 517.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 512.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 510.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 497.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 496.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 476.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 472.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 465.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 460.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 453.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 438.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 433.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 427.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 422.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 422.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 410.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 409.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 409.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 409.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 401.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 397.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 394.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 389.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 388.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 382.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 374.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 371.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 370.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 369.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 366.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 362.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 360.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 355.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 353.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 353.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 352.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 350.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 346.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 343.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 339.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 333.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 331.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 330.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 327.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 325.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 322.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 321.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 320.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 319.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 317.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 316.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 314.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 313.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 312.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 311.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 308.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 308.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 300.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 298.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 298.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 297.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 292.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 291.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 288.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 288.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 287.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 287.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 287.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 287.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 286.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 286.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 283.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 277.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 277.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 276.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 276.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 275.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 274.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 271.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 270.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 268.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 266.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 266.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 264.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 263.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 262.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 261.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 259.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 259.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 258.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 258.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 257.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 256.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 255.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 253.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 252.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 252.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 251.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 248.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 246.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 245.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 244.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 244.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 244.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 244.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 243.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 243.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 243.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 243.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 243.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 242.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 242.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 241.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 241.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 240.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 240.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 239.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 239.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 239.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 237.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 237.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 237.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 236.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 236.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 235.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 234.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 234.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 231.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 230.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 230.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 230.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 229.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 225.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 224.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 223.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 222.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 221.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 218.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 218.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 217.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 216.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 215.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 214.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 212.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 211.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 209.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 209.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 209.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 209.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 208.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 207.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 204.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 203.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 202.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 202.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 201.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 200.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 200.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 200.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 199.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 199.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 199.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 198.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 196.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 196.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 196.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 196.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 195.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 194.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 193.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 193.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 193.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 192.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 191.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 189.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 188.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 187.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 187.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 184.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 183.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 183.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 183.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 182.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 181.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 180.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 180.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 179.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 179.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 178.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 177.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 177.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 175.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 175.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 175.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 174.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 174.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 174.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 171.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 169.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 168.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 168.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 168.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 168.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 167.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 166.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 166.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 165.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 165.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 164.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 162.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 162.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 162.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 162.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 161.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 161.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 161.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 160.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 159.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 158.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 158.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 155.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 155.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 155.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 154.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 153.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 152.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 151.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 150.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 149.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 148.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 147.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 145.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 143.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 142.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 141.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 140.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 140.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 139.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 138.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 138.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 137.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 137.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 137.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 135.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 134.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 133.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 132.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 132.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 131.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 130.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 129.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 128.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 127.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 127.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 126.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 126.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 125.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 124.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 123.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 116.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 116.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 114.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 113.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 112.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 110.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 109.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 108.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 107.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 106.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 106.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 105.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 104.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 103.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 102.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 102.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 97.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 93.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 92.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 88.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 84.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 84.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 84.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 81.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 80.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 72.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 69.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 59.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 42.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 35.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 32.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 27.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 16.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

213.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 213.9
FF:10164-103B2 76 years, female 213.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.3
Pig sample Sample description nTPM
Caudate
nTPM: 137.3
Samples: 4

Max nTPM: 167.3
Min nTPM: 100.9
Sample A Female 100.9
Sample B Female 151.3
Sample C Male 167.3
Sample D Male 129.8

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