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  • TISSUE

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  • TMED8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:9.6 nTPM
FANTOM5:54.4 Scaled Tags Per Million
Pig:30.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001205
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.6
Samples: 300

Max nTPM: 16.4
Min nTPM: 4.4
Std nTPM: 1.7
Median nTPM: 9.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 16.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 14.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 13.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 13.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 13.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 13.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 13.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 13.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 12.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 12.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 12.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 12.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 12.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 12.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 12.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 12.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 12.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 12.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 12.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 12.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 12.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 12.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 12.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 12.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 12.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 12.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 12.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 11.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 11.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 11.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 11.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 11.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 11.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 11.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 11.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 11.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 11.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 11.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 11.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 11.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 11.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 11.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 11.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 11.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 11.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 11.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 11.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 11.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 11.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 11.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 11.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 11.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 11.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 11.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 11.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 11.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 11.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 11.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 11.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 11.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 11.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 11.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 10.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 10.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 10.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 10.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 10.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 10.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 10.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 10.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 10.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 10.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 10.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 10.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 10.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 10.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 10.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 10.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 10.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 10.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 10.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 10.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 10.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 10.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 10.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 10.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 10.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 10.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 10.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 10.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 10.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 10.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 10.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 10.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 10.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 10.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 10.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 10.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 10.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 10.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 10.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 10.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 10.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 10.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 10.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 10.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 10.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 10.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 10.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 10.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 10.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 10.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 10.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 10.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 10.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 10.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 10.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 10.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 10.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 10.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 10.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 10.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 10.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 10.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 10.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 10.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 9.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 9.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 9.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 9.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 9.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 9.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 9.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 9.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 9.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 9.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 9.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 9.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 9.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 9.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 9.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 9.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 9.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 9.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 9.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 9.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 9.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 9.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 9.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 9.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 9.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 9.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 9.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 9.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 9.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 9.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 9.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 9.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 9.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 9.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 9.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 9.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 9.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 9.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 9.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 9.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 9.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 9.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 9.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 9.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 9.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 9.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 9.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 9.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 9.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 9.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 9.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 9.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 9.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 9.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 9.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 9.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 9.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 9.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 9.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 9.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 9.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 9.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 9.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 9.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 9.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 9.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 9.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 9.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 9.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 9.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 9.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 9.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 9.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 8.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 8.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 8.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 8.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 8.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 8.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 8.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 8.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 8.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 8.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 8.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 8.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 8.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 8.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 8.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 8.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 8.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 8.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 8.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 8.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 8.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 8.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 8.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 8.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 8.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 8.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 8.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 8.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 8.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 8.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 8.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 8.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 8.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 8.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 8.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 8.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 8.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 8.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 8.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 8.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 8.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 7.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 7.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 7.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 7.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 7.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 7.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 7.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 7.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 7.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 7.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 7.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 7.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 7.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 7.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 7.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 7.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 7.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 7.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 7.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 7.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 7.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 7.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 7.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 7.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 7.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 7.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 7.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 7.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 7.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 7.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 7.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 7.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 7.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 7.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 7.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 6.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 6.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 6.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 6.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 6.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 6.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 6.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 6.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 6.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 6.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 6.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 6.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 6.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 6.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 5.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 5.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 5.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 5.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 5.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 5.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 5.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 4.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.4
FF:10164-103B2 76 years, female 54.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.4
Pig sample Sample description nTPM
Caudate
nTPM: 30.4
Samples: 4

Max nTPM: 34.9
Min nTPM: 23.2
Sample A Female 23.2
Sample B Female 29.3
Sample C Male 34.9
Sample D Male 34.3

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