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SNTA1
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • SNTA1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:179.2 nTPM
FANTOM5:67.8 Scaled Tags Per Million
Pig:35.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA067154Antibody CAB037059
Glial cells HighMedium
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 179.2
Samples: 300

Max nTPM: 518.3
Min nTPM: 35.9
Std nTPM: 91.2
Median nTPM: 157.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 518.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 495.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 491.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 468.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 465.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 427.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 427.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 421.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 420.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 408.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 400.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 382.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 379.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 371.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 361.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 356.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 355.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 351.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 350.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 349.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 348.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 345.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 342.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 341.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 335.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 330.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 325.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 315.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 313.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 313.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 299.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 299.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 294.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 293.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 285.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 285.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 284.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 282.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 281.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 278.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 274.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 274.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 273.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 272.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 272.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 270.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 262.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 262.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 259.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 253.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 253.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 252.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 251.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 250.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 249.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 246.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 245.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 245.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 239.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 238.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 238.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 238.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 236.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 234.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 233.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 232.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 232.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 231.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 231.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 230.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 227.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 226.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 225.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 224.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 222.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 220.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 220.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 220.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 218.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 216.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 216.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 215.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 213.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 212.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 210.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 209.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 207.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 206.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 206.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 206.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 205.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 203.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 203.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 202.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 202.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 200.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 199.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 198.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 197.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 197.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 197.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 196.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 195.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 194.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 193.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 192.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 192.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 189.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 189.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 189.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 187.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 186.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 185.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 185.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 184.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 182.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 182.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 182.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 182.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 181.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 181.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 180.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 178.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 178.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 177.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 176.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 175.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 174.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 174.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 172.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 171.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 170.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 169.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 168.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 168.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 167.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 167.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 167.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 166.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 166.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 165.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 162.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 162.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 161.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 161.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 160.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 160.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 159.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 158.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 158.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 157.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 156.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 155.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 155.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 154.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 153.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 153.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 153.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 152.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 152.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 151.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 151.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 150.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 149.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 149.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 148.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 148.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 147.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 147.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 146.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 146.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 145.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 145.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 144.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 144.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 143.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 143.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 143.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 142.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 141.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 141.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 141.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 141.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 141.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 139.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 139.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 138.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 137.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 135.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 135.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 134.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 133.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 133.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 133.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 132.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 132.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 132.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 132.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 131.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 131.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 130.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 130.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 129.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 127.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 127.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 126.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 126.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 126.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 125.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 125.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 124.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 124.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 124.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 123.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 123.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 122.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 121.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 120.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 120.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 119.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 119.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 119.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 117.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 117.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 117.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 116.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 114.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 114.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 113.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 112.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 112.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 111.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 109.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 109.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 108.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 106.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 106.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 105.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 105.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 104.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 104.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 104.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 103.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 102.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 101.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 101.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 100.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 99.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 95.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 95.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 94.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 94.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 93.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 93.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 91.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 91.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 90.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 90.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 90.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 90.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 88.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 88.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 88.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 86.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 86.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 86.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 85.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 85.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 84.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 84.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 83.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 82.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 80.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 80.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 77.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 76.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 76.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 76.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 76.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 73.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 72.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 70.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 69.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 69.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 67.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 66.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 66.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 59.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 54.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 53.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 52.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 52.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 51.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 48.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 46.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 45.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 43.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 35.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.8
FF:10164-103B2 76 years, female 67.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.6
Pig sample Sample description nTPM
Caudate
nTPM: 35.6
Samples: 4

Max nTPM: 41.9
Min nTPM: 28.7
Sample A Female 28.7
Sample B Female 41.9
Sample C Male 39.6
Sample D Male 32.3

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